Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00178 ATGCAAAAGTTCATTTTGTTTGTTATCATTCTTGGTTTTATTTCTTCTTGTTTATGTGCAAGATTGAATTTTGGAACCAAAAATGGTATTTATAATGTGATGGATTTTGGTGCACGTGGGGATGGAAAAACTAATGATTCacaaGCATTTGCAAGTGCATTTAGCAGTGCATGTAAGGCAGAAGGGATGTCAACATTAATTATACCagctaaaaaattattcttgGTGACTAAAATAACCTTTAGCGGCCCTTGCAAAACCAAAATTCATATTCAGTTTGATGGAAAAATAGTTGCACCCCCTAAAGCAGCGTGGAAAAGTGCAGAATATTTAATTTCCATTGAATATTTAGACGGACTCACAATTGATAGCAATGGCCAAGGAGGAGCTGATGGAGATGGATCAACTTGGTGGCAATGTCAAGGTTGTAATCGACCTGGGGTCTTTTATTTCCATTCCTGCAAGGATCTCAGTGTTAGTAACATAATGGTCACTAATAGTCCAAGTGTTCATGTATCCGTTAATCAGTGCAATGGTGCAACATTCTCTCATATATCTATTAATTCTCCTGCTACTAGCCCCAACACTGATGGCTTTGACATTTCTTTTTCTAATAATATCTTGGTAGAagattcaaatataaaatctggTGATGATTGTATTGCTATCAATGGTGGCTCCTCTTTTATCAATGCTACTGGAGTTACTTGTGGACCAGGGCATGGAATAAGTGTTGGTAACCTTGGCAGAAGTGGAGCTAGTGATCAAGTTTCCAATATTCATGTACGAAATTGTACTTTTATTGGGACTACAAATGGAGCAAGAATCAAGACATTTTCGGGTGGATCAGGTTATGCAAAACAAATTACATTTGAGCAAATCATCCTCGTTAATGTTAAGAACCCAATAATTATAGATCAAGATTATAGTATTATACCCAAGGAAACAGATGTGTCGGTGAGTGATGTGACATATCGAAGATTTACTGGAACTTCTGCTAGCGATGTAGCTATTGCTTTAAAATGTAGCCATGCGGGTTGTTTTGGTCTTCTATTTGATCAAAATAACATTGTCTCTGCTCAACCAGGAAAGAAGACATCATCTTCATGTATAAATGCTCATGGATCAGCTAGAAATACTATTCCAAGTGTTTCTTGCCTTAAATAA 1167 0.3565 MQKFILFVIILGFISSCLCARLNFGTKNGIYNVMDFGARGDGKTNDSQAFASAFSSACKAEGMSTLIIPAKKLFLVTKITFSGPCKTKIHIQFDGKIVAPPKAAWKSAEYLISIEYLDGLTIDSNGQGGADGDGSTWWQCQGCNRPGVFYFHSCKDLSVSNIMVTNSPSVHVSVNQCNGATFSHISINSPATSPNTDGFDISFSNNILVEDSNIKSGDDCIAINGGSSFINATGVTCGPGHGISVGNLGRSGASDQVSNIHVRNCTFIGTTNGARIKTFSGGSGYAKQITFEQIILVNVKNPIIIDQDYSIIPKETDVSVSDVTYRRFTGTSASDVAIALKCSHAGCFGLLFDQNNIVSAQPGKKTSSSCINAHGSARNTIPSVSCLK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00178 388 Gene3D - 20 386 IPR012334 -
Tsu08g00178 388 PANTHER - 1 386 - -
Tsu08g00178 388 SUPERFAMILY Pectin lyase-like 27 387 IPR011050 -
Tsu08g00178 388 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Tsu08g00178 388 SMART pbh1 204 225 IPR006626 -
Tsu08g00178 388 SMART pbh1 257 278 IPR006626 -
Tsu08g00178 388 SMART pbh1 177 203 IPR006626 -
Tsu08g00178 388 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 386 - -
Tsu08g00178 388 Pfam Glycosyl hydrolases family 28 58 374 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00178 Tsu-Chr8 1640484 1650471 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00178 24 379 Glycoside Hydrolase AT5G27530 45.380 2.53e-94 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00178 K01184 - gmx:100820332 427.172