Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4519 ATGCAGAGGCTAATCTGTGGCTTTTTGATTCTTGGTTTTGTTTCATCCTGTCTATGCATAAACATTATTCATGATGTGACGCGCTATGGAGCTCGTGGAGATGGAAAATCTGATGATTCACATGCATTCTTGAGTGCATGGCAACAAGTGTGTAGAGCTGGAGGGATGGCAACCCTATTTATACCAGGAGGAAAAACATTCTTGGTAACGAGCATGACAACAATATCAGGTCCTTGCAAGACCTCAATTATTCACATTCAGCTGCTAGGGAACATTGTTGCGCCTTCTTTTGATGCATGGGGGCCTGACAAGTCAAAATGGATTTCAATTCAATATGTAAACCGTCTCACACTTTATGGTGGAGGAAAAATTGATGGCCAGGGTCATACATGGTGGGAGAGATGCAAAAATTGTTATCGACCTATGTCCTTAAGTTTCCATGGATGCAAAGACCTTATTGTTAGTTACCTTCACTTCTTCAATAGTCCTGGAAGTCATATAACCGTAGATGGTTGCGTTGGTGCGAGATTCTCCCATTTAAGTATCCATGCTCCTCCTAACAGCCCCAACACTGATGGATTTGACATTGCTAATTCCAGAAATATCTTGATAGAAGATTCCACTATAGGAACGGGTGATGATTGTATTGCGATTAATGGTGGTTCATCTTTCATCAATGCTACTCGAGTTGCTTGTGGACCAGGCCATGGGATAAGCGTTGGCAGCCTTGGCAAACATGGTGCTCATGACACAGTAGAAGAGGTTTATGTATATGATTGCAGCTTCACAGGGACTCAAAATGCAGCAAGAATCAAGACAGTTCCAGGTGGATCAGGTTATGCGAGGAGGATAACTTTTGAGAAAATAACACTTACAAGGACCGGAAACCCAATAATTATAGACCAGTACTATTCTCTAGCGGGGTATTCTTCGGGTTCAACAGTGCAAGTGAGTGATGTGACATATCGTGGAGTCCATGGAACCTCTATAGATGTTATGGCTATTAACTTAAATTGCTCCCCACCGGGTTGTTTCAATCTTGTGTTCGATAATATCAACATTGTCTCTTCTATCCCAGGAAAGAGGGCTTTTGCTTCTTGCAAAAATGCCCATGGAGCGGTTAGATCTTCTACTCCAAGTATCCATTGCTTATTGAGGTGA 1161 0.4229 MQRLICGFLILGFVSSCLCINIIHDVTRYGARGDGKSDDSHAFLSAWQQVCRAGGMATLFIPGGKTFLVTSMTTISGPCKTSIIHIQLLGNIVAPSFDAWGPDKSKWISIQYVNRLTLYGGGKIDGQGHTWWERCKNCYRPMSLSFHGCKDLIVSYLHFFNSPGSHITVDGCVGARFSHLSIHAPPNSPNTDGFDIANSRNILIEDSTIGTGDDCIAINGGSSFINATRVACGPGHGISVGSLGKHGAHDTVEEVYVYDCSFTGTQNAARIKTVPGGSGYARRITFEKITLTRTGNPIIIDQYYSLAGYSSGSTVQVSDVTYRGVHGTSIDVMAINLNCSPPGCFNLVFDNINIVSSIPGKRAFASCKNAHGAVRSSTPSIHCLLR* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4519 386 Gene3D - 21 382 IPR012334 -
Lja3g4519 386 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 20 384 - -
Lja3g4519 386 ProSitePatterns Polygalacturonase active site. 229 242 IPR000743 GO:0004650|GO:0005975
Lja3g4519 386 SUPERFAMILY Pectin lyase-like 8 385 IPR011050 -
Lja3g4519 386 PANTHER - 20 384 - -
Lja3g4519 386 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Lja3g4519 386 Pfam Glycosyl hydrolases family 28 51 371 IPR000743 GO:0004650|GO:0005975
Lja3g4519 386 SMART pbh1 252 273 IPR006626 -
Lja3g4519 386 SMART pbh1 281 302 IPR006626 -
Lja3g4519 386 SMART pbh1 312 334 IPR006626 -
Lja3g4519 386 SMART pbh1 199 220 IPR006626 -
Lja3g4519 386 SMART pbh1 172 198 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4519 Lja-Chr3 86987575 86991924 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4519 26 384 Glycoside Hydrolase AT5G17200 45.312 3.02e-106 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4519 K01184 - gmx:100801217 424.861