Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01379 ATGTTTGGGAGGTCAATAGTTGGATCCCAAATAACATTTCATAATGTGGTCAACTATGGTGCTCGTGGCGATGGAAAATCTGATGATTCCCATCTTCAAGGGAAAATAGTTGCACCTCAGAGGAATGAATGGGCAAAAGGTCTGCAAGTTGATGATAAGTCCTCTTTAATTTTAATCTCACAAGTCAACAGTCTCAGAATTCTTGGAAGTGGACAAATCAATGGCTTTGGTTCTTCTTGGTGGAATTGCCCTTCTTGTCAAAGACCAAAGGTTATTGGTTTTGAACAATGCAATGATCTTAGAGTTAGTTATCTGAGCATAATTGACAGTCCACGAGCTCACGTAACAGTAGATGGTTGTAACAATGCTGTGTTCTCTCATATCAATATTCATGCTCCTGGTGACAGCCCCAACACCGATGGATTTGACATTTCTGCTTCAAAATATATAACCATTCAAGATTCCATTATAGGAACAGGTGATGATTGTATTGCCATTAATGGTGGCTCCTCGTTCATCAATGCTACTAGAATTGCATGCGGACCAGGCCATGGAATAAGTGTTGGGAGCTTGGGAAGAAACAGGGAGCATGATACAGTTGAAGAAGTTTATGTGAGGAATTGCAGCTTCACAAACACCCAAAATGGAGCAAGAATCAAGACATGGAAGGGTGGATCAGGTTTTGCAAGAAAAATCACTTATGAGAAAATCACATTAAGAAAGGCTTTCAACCCTATAATCATAGACCAGCACTATGACTATGATGGTTTGAAGGTACTCAGAACTTTAGATTGA 795 0.3987 MFGRSIVGSQITFHNVVNYGARGDGKSDDSHLQGKIVAPQRNEWAKGLQVDDKSSLILISQVNSLRILGSGQINGFGSSWWNCPSCQRPKVIGFEQCNDLRVSYLSIIDSPRAHVTVDGCNNAVFSHINIHAPGDSPNTDGFDISASKYITIQDSIIGTGDDCIAINGGSSFINATRIACGPGHGISVGSLGRNREHDTVEEVYVRNCSFTNTQNGARIKTWKGGSGFARKITYEKITLRKAFNPIIIDQHYDYDGLKVLRTLD 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01379 264 ProSitePatterns Polygalacturonase active site. 177 190 IPR000743 GO:0004650|GO:0005975
Vian9g01379 264 SUPERFAMILY Pectin lyase-like 12 253 IPR011050 -
Vian9g01379 264 PANTHER - 22 253 - -
Vian9g01379 264 Gene3D - 4 261 IPR012334 -
Vian9g01379 264 SMART pbh1 120 146 IPR006626 -
Vian9g01379 264 SMART pbh1 147 168 IPR006626 -
Vian9g01379 264 SMART pbh1 200 221 IPR006626 -
Vian9g01379 264 Pfam Glycosyl hydrolases family 28 37 253 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01379 Vian-Chr9 29284681 29288606 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01379 31 253 Glycoside Hydrolase AT3G15720 53.812 3.45e-75 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01379 K01184 - gmx:100782390 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g01379 9 29284681 29288606 Vian9g01379 9 29284681 29288606 ECH