Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0181 ATGAAAGGGTTAATCGCTTGTATTTTGATTCTTTGTTTTGTTTCACCCTCTTTGTGTCTAAGGAGGATTGGATCAAACAAAACGATTTATTTTAATGTGATGGAACATGGAGCTCGTGGCGATGGAAAAACGGATGATTCACATGCATTTTTAAGTGCATGGCAACGCACGTGTGAAGCAGAAAGTGCAGCAACTCTGTTCATACCACCAAGAAAAGTGTTTTTGGTGAAGAAATTAAACCTAAACGGTCCTTGCAAGGCCACAAATATTCTGATCTCAAATGTAAACGGTTTAACAATTGATGCCAAAAGAGGAATGTTTGATGGCTATGGTTCTACTTGGTGGCAATGCAAAAGTTGTAAACGACCAACAGCTTTGCGTTTCCATGGTTGCAATGGTCTTACTGTGAAATATCTAAGGATGATGAATAGCCCTGGAGCTCACATATCTGTCAATGGTTGCGAGGGTGCAAAATTCTCTCAAATCAATATTCATGCTCCTGCCCACAGTCCCAACACTGATGGATTCGACATTGCTTCTTCCAAAAATATTTTGATCCAAGATTCCACTATAGGAACCGGTGATGATTGTATTGCTATCAATGGTGGCTGCTCTAACATCAGTGCTGTTGGGGTTGCTTGTGGACCAGGCAATGGAATAAGCATTGGCAGTCTTGGTAGAAATCAAGGTCATGAAACAGTTGAAGAAGTTCATGTAAGAAATTGCAGCTTCACGGGAACCACAAATGGAGCCAGAATCAAGACATGGCCTGGAGGATCAGGTTATGCAAGAAAGATCACCTTCGAGCAAATAAAACTAACAGATACTCGTAACCCAATAATTATAGACCAATACTATGGACATAACATTTCATCGGTATATTCATATTATTTATCTGATGCCAAAGCAATCGATTTACGATGCAGTAAATTAGGCTGTTTCGGTATCATATTGGATCAAATCAACATAGTCTCTGCTGAACAAGGAAAACATGCCTATGCTTCTTGCAAAAATGCTCATGGAATCGTTTTATCTTCTATTCCCAGTGTCTCTTGCTTGTTGAATTGA 1068 0.3961 MKGLIACILILCFVSPSLCLRRIGSNKTIYFNVMEHGARGDGKTDDSHAFLSAWQRTCEAESAATLFIPPRKVFLVKKLNLNGPCKATNILISNVNGLTIDAKRGMFDGYGSTWWQCKSCKRPTALRFHGCNGLTVKYLRMMNSPGAHISVNGCEGAKFSQINIHAPAHSPNTDGFDIASSKNILIQDSTIGTGDDCIAINGGCSNISAVGVACGPGNGISIGSLGRNQGHETVEEVHVRNCSFTGTTNGARIKTWPGGSGYARKITFEQIKLTDTRNPIIIDQYYGHNISSVYSYYLSDAKAIDLRCSKLGCFGIILDQINIVSAEQGKHAYASCKNAHGIVLSSIPSVSCLLN* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0181 355 Pfam Glycosyl hydrolases family 28 91 340 IPR000743 GO:0004650|GO:0005975
Apr10g0181 355 PANTHER - 1 353 - -
Apr10g0181 355 SUPERFAMILY Pectin lyase-like 27 353 IPR011050 -
Apr10g0181 355 SMART pbh1 234 255 IPR006626 -
Apr10g0181 355 SMART pbh1 154 180 IPR006626 -
Apr10g0181 355 SMART pbh1 181 202 IPR006626 -
Apr10g0181 355 SMART pbh1 263 284 IPR006626 -
Apr10g0181 355 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 353 - -
Apr10g0181 355 Gene3D - 21 350 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0181 Apr-Chr10 4260522 4264365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0181 9 353 Glycoside Hydrolase AT5G17200 39.853 3.25e-86 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0181 K01184 - gmx:100782390 453.751