Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0713 atgcaaaggctaatCACTTGTATCTTGATTCTTGGTTTTGTTTCACCCACTTTGTGTCTCGGCAGCGATGCTGGAACCaaaatgagatattttaatgtGATGGACTATGGAGCTCGTGGCGATGGCACATGTGATGATTCAAATGCAATTTTAAGTGCATGGCAGCGTACGTGCGGAGCAGAAGGGCCAGCAACTCTAGTCATACCTtcaggaaaaatatttttggtgacGAGATTAAAGCTAGAAGGTCCGTGCAAGGCCCCAGGTATTCGGATTAAGTTTGCAGGGAAAATAGTTCCACCTGCCATGGATGCATGGGCTGGTGATAGGTCAAGTTGGATTGTGATCTCATATGTAAACGGTCTAACAATTGATGCCAGCGGAGGAATTAATATTGATGGCTATGGTTCTACTTGGTGGGAGAAATGCAGAAGTTGTCAACGGCCAACAGTCTTACGTTTCCATGCTTGTAATGGTCTTTTTGTCAATTCTCTGAGAATGACTAATAGCCCTGGAGCTCACATATCTGTAAATGGTTGCGACGATGCAAGATTCTctcaaatcaatattaatgcTCCTCAGCACAGTCCCAACACTGATGGGTTTGATATTGCTAGttccaaaaatatattgatagaaGATTCTACTATAGGAACCGGTGATGACTGTATTGCCATCAATGGTGGCTCCTCTTACATCTATGCTACTAGGGTTGCTTGTGGACCAGGCCATGGGATAAGCATTGGCAGCCTTGGTAAAAATAAATCTCAAGAGATAGTTGAAGAGGTTTATGTACGGAATTGCAGCTTCATTGGGACTACAAATGGAGCAAGAATCAAGACATGGCCGGGTGGATCAGGCTATGcaagaaaaattacatttgagcAAATCAAACTAAGAGAGACTCAGAATCCAATAATTATAGACCAAAACTATGGCATCAAAAGCCCAAATCCTACGgataaagCAGTCAAGGTGAGTGAAGTGACTTATCGTGGATTTGATGGAACTTCTGCTGATGGCAAGGCTATTGACTTAAAATGTAGCACATCGGGTTGTTTCAACATTACATTGGATCAAATTCACATTGTCGCTTCACAACCAAGCAAACCAACCTATGCTTCTTGCAAGAATGCTCATGGAAAGGTGGGATATAGTGTTCCAAAAGTCTTTTGCTTATCAAAATGA 1188 0.3906 MQRLITCILILGFVSPTLCLGSDAGTKMRYFNVMDYGARGDGTCDDSNAILSAWQRTCGAEGPATLVIPSGKIFLVTRLKLEGPCKAPGIRIKFAGKIVPPAMDAWAGDRSSWIVISYVNGLTIDASGGINIDGYGSTWWEKCRSCQRPTVLRFHACNGLFVNSLRMTNSPGAHISVNGCDDARFSQININAPQHSPNTDGFDIASSKNILIEDSTIGTGDDCIAINGGSSYIYATRVACGPGHGISIGSLGKNKSQEIVEEVYVRNCSFIGTTNGARIKTWPGGSGYARKITFEQIKLRETQNPIIIDQNYGIKSPNPTDKAVKVSEVTYRGFDGTSADGKAIDLKCSTSGCFNITLDQIHIVASQPSKPTYASCKNAHGKVGYSVPKVFCLSK 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0713 395 Pfam Glycosyl hydrolases family 28 58 381 IPR000743 GO:0004650|GO:0005975
Ssu2g0713 395 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 393 - -
Ssu2g0713 395 ProSitePatterns Polygalacturonase active site. 237 250 IPR000743 GO:0004650|GO:0005975
Ssu2g0713 395 PANTHER - 1 393 - -
Ssu2g0713 395 SUPERFAMILY Pectin lyase-like 27 393 IPR011050 -
Ssu2g0713 395 Gene3D - 20 390 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0713 Ssu-Chr2 38788394 38792682 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0713 8 382 Glycoside Hydrolase AT5G27530 47.244 3.20e-104 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0713 K01184 - gmx:100820332 461.455