Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01096 ATGCAGAGGGTGATAAGTTGCATGTTGATTCTGGGTTTTGTTTCAGGCACTTTGTGTCTGAGCAGCAATGCTCAAATGAAGTATTCGAATGTGATGGACTATGGAGCTCATGGCGATGGCACAACTGATGATTCAAATGCAATTTTAAATGCATGGAATGGTGTGTGTGGAGGGGAAGGACCAGCAACTCTATTGATACCTTCAACCAAAACCTTTTTGGTGAAAAGATTAAAGCTAAATGGTCCTTGCAAGGCCCCAAATGTAGCCATTAAGGGTGGATCAGGCTATGCAAGAAAGATCACGTTTGAGGAAATCATACTTCAAGATGTTAAGAATTCAATCATTATAGACCAGTACTACGACATTAAAACTCAAAGTGAAGGGGAAAGTGCGGTGAAGGTGAGTGAAGTGAGTTATCGAGGCTTCAATGGAACTTCTGCAAGTGATAAGGCAATCAACGTGAACTGTAGCCCATCTGGTTGTTCCGACATTTCAATGGATCAAATATACATTGTCTCTTCACAACCATCCAGAAAAGCCTATGCTTTTTGCCAGAATGCTAAAGGGACCATTGGAAACACTGTTCCAAAAGTATCTTGTGTATGA 606 0.4109 MQRVISCMLILGFVSGTLCLSSNAQMKYSNVMDYGAHGDGTTDDSNAILNAWNGVCGGEGPATLLIPSTKTFLVKRLKLNGPCKAPNVAIKGGSGYARKITFEEIILQDVKNSIIIDQYYDIKTQSEGESAVKVSEVSYRGFNGTSASDKAINVNCSPSGCSDISMDQIYIVSSQPSRKAYAFCQNAKGTIGNTVPKVSCV 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01096 201 Gene3D - 10 88 IPR012334 -
Spst4g01096 201 Gene3D - 89 199 IPR012334 -
Spst4g01096 201 SUPERFAMILY Pectin lyase-like 92 200 IPR011050 -
Spst4g01096 201 SUPERFAMILY Pectin lyase-like 18 88 IPR011050 -
Spst4g01096 201 PANTHER - 88 190 - -
Spst4g01096 201 Pfam Glycosyl hydrolases family 28 90 188 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01096 Spst-Chr4 43818387 43819688 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01096 28 90 Glycoside Hydrolase AT5G17200 42.857 4.85e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01096 K01184 - vra:106773269 159.073