Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0060 ATGCAAGAGGGACTAGTCTCTTGCATTTTGATTCTTTGTTTAGTTTCACCATGTCTATGTCTCAAATGGTCGAATTTTGGAGTTGAAACTGAAGAATCAACTTATAATGTGTTGGATTATGGTACTAATGGGAATGGAGAATCTGATGATTCAAACGCATTTTTAAGTGCATGGAATGATACATGTAGATCTCAAGGGATAGCAAATCTTGTTATACCAAAAGGAAAAGTATTCATGTTGAAGAACTTAGAGCTAAAGGGTCCATGCAAAGCTAATAGCATTCACATTCAGCTTTTTGGCAACATAGTTGCACCAACAAAGGATGAATGGGTTGATGATAAGAAAGATTTGATTATAATCTCAAATGTAAATTCTCTCACAATTGATGGTGGAGGTTATATTGAAGGCAATGGCAATACTTGGTGGGAGAGATGCAAAGATTGTACACGACCTGGTGTTTTGAGGTTTAGTTCTTGCAATGATCTAAGTGTTAGTTCTCTAAACCTGGTTAATAGCCCAAGATTTCATATTGCCATAAATAATTGTAAGAATGCAAGATTCTTCAATATGAATATTAATGCTCCTGGTAATAGCCCCAACACTGATGCATATGACATCTCTAATTCTAAAAATGTAGTGTTTCAAGATTCTACTATAGCAGTTGGTGATGATTGCATTGCTATTAATGGGGGCTGCTCTTATATCAATGCTACTGGGATTACATGTGGACCAGGCCATGGGATAAGCATTGGAAGCCTTGGGAAAAATAAAGATTATGAAACAGTTGAAGAAGTTCATGTCAAGAATTGCACCTTCAAAGGGACAACAAATGGAGCAAGAATCAAGACATGGGAGGGTGGATCAGGTTATGTAAGGAATATCATTTTTGAGGATATCATACTTATAGAGGCTAAGAATCCAATAATTATAGACCAACACTATGGATCTAAAAATGCAAATATTGAAGTGGTATCAATGCCAATTAGTGATGTCACATTTCGAGGCTTTGAAGGAACTTGTGCTAAAGAAAAAGCTATTAACTTAAATTGTAGCTCCAACGGTTGCTTCAACATTATATTGGATCAAATTAACATTGTTGCTTCTAACCCAAAAAAGAAGGCACAAGCTTTTGTCACCAATGTCCATGGCATAGTTCAAAATGTTATTCCTAAAGTGTATGGCATGTTGGAATAG 1194 0.3585 MQEGLVSCILILCLVSPCLCLKWSNFGVETEESTYNVLDYGTNGNGESDDSNAFLSAWNDTCRSQGIANLVIPKGKVFMLKNLELKGPCKANSIHIQLFGNIVAPTKDEWVDDKKDLIIISNVNSLTIDGGGYIEGNGNTWWERCKDCTRPGVLRFSSCNDLSVSSLNLVNSPRFHIAINNCKNARFFNMNINAPGNSPNTDAYDISNSKNVVFQDSTIAVGDDCIAINGGCSYINATGITCGPGHGISIGSLGKNKDYETVEEVHVKNCTFKGTTNGARIKTWEGGSGYVRNIIFEDIILIEAKNPIIIDQHYGSKNANIEVVSMPISDVTFRGFEGTCAKEKAINLNCSSNGCFNIILDQINIVASNPKKKAQAFVTNVHGIVQNVIPKVYGMLE* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0060 397 SUPERFAMILY Pectin lyase-like 31 394 IPR011050 -
Lan12g0060 397 SMART pbh1 262 283 IPR006626 -
Lan12g0060 397 SMART pbh1 291 312 IPR006626 -
Lan12g0060 397 SMART pbh1 209 230 IPR006626 -
Lan12g0060 397 ProSitePatterns Polygalacturonase active site. 239 252 IPR000743 GO:0004650|GO:0005975
Lan12g0060 397 PANTHER - 5 391 - -
Lan12g0060 397 Pfam Glycosyl hydrolases family 28 62 380 IPR000743 GO:0004650|GO:0005975
Lan12g0060 397 Gene3D - 24 393 IPR012334 -
Lan12g0060 397 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 5 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0060 Lan-Chr12 538805 546137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0060 9 383 Glycoside Hydrolase AT5G17200 40.988 7.45e-101 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0060 K01184 - gmx:100801217 426.402