Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g0168 ATGCAAGGGGGGCTAATTTCTAGCATTTTGATTCTTAGTTTTGTTTCACCATGTCTATGTTTTACGAGGTTGAATTTTGGACTTGAAACCAAAGAATCAACTTATAATGTGTTGGATTATGGTGCTAATGGGGATGGAAAATCTGATAATGAAAATGCATTTTTAAGTGCATGGAATGATGCATGTGGAACTGAAGGGAATGCAACTCTTGTTATACCAAAAGGAAAAGTATTCATGTTGAAGAACTTACAGCTAAATGGTCCATGCAAGGCTAATAGCATTCACATTCAGCTTTCTGGTGACATAGTTGCACCAACTATGGATAAATGGAGTGATGAAAACTCACGTTTGATTATAATATCAAATGTAAATTCTCTCAGAATTGATGGTGGTGGAAATATTGATGGCAAAGGCAATACTTGGTGGGAGACATGCAACAAGGAGTGTAAACGCCCTGGTCTTTTGCGTTTTAGATCTTGCAATGATCTAAGTGTTAGTTCCTTGAACCTGGCTAATAGCCCAGGATCTCACATAGCCATAAATCATTGTGAGAATGCAAGATTCTTCAATATGAATATTAATGCTCCTGGTCATAGCCCCAACACTGATGCCTATGACATTTCTAGTTCTAAAAATGTTGTGTTTGAGGACTCTACTATAGCAGTTGGTGATGACTGCATTGCTATCAATGGTGGCTGTTCTTATATCAATGCTACTGGGCTTGCATGTGGACCAGGCCATGGGATAAGCATTGGAAGCCTTGGGAAAAATAATAGTCATGAGATAGTTGAAGAAGTTTATGTAAATAATTGCACCTTCAATGGGACAACAAATGGAGCAAGAATCAAGACATGGGAGGGTGGATCAGGATACGTAAGGAATATTACTTTTGAGAATATCAAACTTATACAAGCTGACAACTCAATAATTATAGACCAACACTATGGTACAAAAAATCCAAATAATGAAGCGGCATTTTTAAAGGCATGGAATGATACATGTAGTGCTGAAGGGAATAAAGCAACTCTTGTTATACCAAAAGGAAAAGTATTCTTGTTGAAGAACTTAGACCTAAAAGGTCCATGCAAAGCTACTAACATTCACATTCAGCTTTCTGGGAAAATAGTTGCAGCAAGTATGGATGAATGGGGTAATGATAAGTTACGTTTGATTATAATCTCAAATGTAACTTCTCTCACAATTGATGGTGGTGGAAAGATTGATGGCAATGGCAAAATCCCCAACACTGATGGATTTGACCTTTGGAATTCTAAAAATGTAGTGATTGAAGACTCTATTGTAGCAGTTGGTGATGATTGCATTGCTATCAAAGCTGATTGCTCTTATATCAATGTTACTAGGATTACATGTGGACCAGGCCATGGGATAAGCATTGGAAGCCTTGGGGTAAATAAGAGTTATGAGACAGCTGAAGAAATTTATGTTAAGAATTGCACCCTCAAGGGGGTAACAAATGGAGCAAGAATCAAGACATGGGAGGGTGCACCAGGTTTTGTAAGGAAGATCACTTTTGAGGATATCATACTTATAGATGCTGCCAATCCAATAATTATAGACCAACACTATGGTTCTAAACATCCACACAAAGATGCGGCATTTTTAAGTGCATGGAATGATGCATGTGGAACTGAAGGGAATGCAACTCTTGTTATACCAAAAGGAAATGTATTCATGTTGAAGAACTTACAGCTAAATGGTCCATGCAAGGCTAATAGCATTCACATTCAACTTTATGGCGACATAGTTGCAGCAAGTATGGATGAATGGGGTAATGATAAGTTACATTTGATTACAATCTCAAATGTAACTTCTCTCACAATTGATGGCGGTGGAAGTATTGATGGCAATGGCAAAACTTGGTGGGAGGCATGCAGAGATTGTCAAAGACCTAGTATTTTGTATTTTTATGGGTGCAAGGATATAAGTGTTAGTTCCCTAAACGTGGCTAATAGCCCAGGATTTCATGTACCCATAAATTGTAGTGAGAATCTAAGATTCTCCAATGTGAATATTACTGCTCCTGGTGATAGCCACAACACTGATGGATTTGACCTTTGGAATACTAAAAATGTTGTGTTTGAAGATTCAGTTATATCAGTTGGTGATGATTGCATTGCTATCAAAGCTCAATGCTCTTATATCAATGTTACTAGGCTTACATGTGGACCTGGCCATGGGATAAGCATTGGAAGCCTTGGGGTAGATCAGAATTATGAGACTGCTGAAGAAATTCATGTCAAGAATTGCACCTTCAAGGGGGTAACAAATGGAGCAAGAATCAAGACATGGGAGGGTGCACCAGGTTATGCAAGGAAAATCAGTTTTGAGAATATCATACTTATAGATGCTGAGAACCCAATAATTATAGACCAGCACTATGGTACTAAACATCCAAACAATAATTCGACAACAAAGCAAACAACACTTCAACAACCAACACAACTTGAGCTTCTGCGCCAAACTCACAACCTGCAGCATCCTTTTCAGCCTATGACTTGTCCCTTTTCAGATGAACCTGCCATAACATGTAATTCCACTGCACATAGAGGAAAGGAAATTTTGCAAGGGCAAGAACAACAACAAACCCCCAAAGGGTCACAAGTTACAAAATCTGTAAGAAGGAATAATTTTGTTTCACCATGTCTATGTTTCACAAGGTTGAATTTTGGACTTGCAATCAAAGAATCAAGTTACAATGTGATGAATTATGGTGCTAAGGGTGATGGAAAATCTGATGATGCAAATGCATTTTTAAGTGCATGGAAAAATGCATGTGGAGTTGAAGGGGTATCAACTCTTATTATACCAAAAGGAAAAGTATTCATGTTGAAGGACTTAGAGTTAAAGGGTCCATGCAAAGCTACTAGCATTCACATTCAGCTTTTAGGAAACATAGTAGCACCAAATATGGATCAATGGGGTAAAGATAAGATACGTTTGATTAGAATCTCAAATGTAAAATCTCTCAAAATTGATGGTGAGGGAAAAATTGAAGGCAATGGCTCTTCTTGGTGGCAGAAATGCAGAAATTGTAAACGACCTCGTCTTTTGGAGTTTTATGCATGCAATGATCTAAGTGTTAGTTACGTGAACCTGGCTAATAGCCCAGGAGCACACATATCAATAAATAGTGGTGACAGATCAAGATTTGTTCATATGAATATTAATGCTCCTAGTAATAGCCCTAATACTGATGGATTTATCATCTCTGGTTCTAGAAATGTTGTCTTTGAAGACTCTACTATAGCTACTGGTGATGACTGCATTGCTATCAAAGCTGGCAGCTCTTATATCAATGCTACTAGGCTTGCTTGTGGACCTGGCCATGGGATAAGTGTTGGAAGTCTTGGGGAAAATAAACGTCGTGATACAGTTGAAGAAGTTCATGTAAAGAATTGCACCTTCAGTGGAACAACAAATGGAGCAAGAATCAAGACATGGGAAGGTGGATCAGGTTACGTAAGAAAGGTCACTTTTGAGGATATCAAACTTATAAAGACTGGCTACCCAATAGTTATAGACCAACACTATGGTACTAAAAATCCAAATAAAAATGCGGGATCATTGCAAATTAGTGAAGTGACATTCAAAGGGTTTGAAGGAACTTCAGCTGATGGAAGAGCTATTAGCTTAAGTTGCAGCTCCAATGGTTGCTTCAACATTATATTGGATCAAATTAACATTGTCTCTTCTAATCCAAAAATGAAGGCACAAGCTTCTTGCAACAATGCACATGGTAGAGTTGGAAAAGTTATTCCTAATGTACCTTGCATGTTGAAATAA 3804 0.3796 MQGGLISSILILSFVSPCLCFTRLNFGLETKESTYNVLDYGANGDGKSDNENAFLSAWNDACGTEGNATLVIPKGKVFMLKNLQLNGPCKANSIHIQLSGDIVAPTMDKWSDENSRLIIISNVNSLRIDGGGNIDGKGNTWWETCNKECKRPGLLRFRSCNDLSVSSLNLANSPGSHIAINHCENARFFNMNINAPGHSPNTDAYDISSSKNVVFEDSTIAVGDDCIAINGGCSYINATGLACGPGHGISIGSLGKNNSHEIVEEVYVNNCTFNGTTNGARIKTWEGGSGYVRNITFENIKLIQADNSIIIDQHYGTKNPNNEAAFLKAWNDTCSAEGNKATLVIPKGKVFLLKNLDLKGPCKATNIHIQLSGKIVAASMDEWGNDKLRLIIISNVTSLTIDGGGKIDGNGKIPNTDGFDLWNSKNVVIEDSIVAVGDDCIAIKADCSYINVTRITCGPGHGISIGSLGVNKSYETAEEIYVKNCTLKGVTNGARIKTWEGAPGFVRKITFEDIILIDAANPIIIDQHYGSKHPHKDAAFLSAWNDACGTEGNATLVIPKGNVFMLKNLQLNGPCKANSIHIQLYGDIVAASMDEWGNDKLHLITISNVTSLTIDGGGSIDGNGKTWWEACRDCQRPSILYFYGCKDISVSSLNVANSPGFHVPINCSENLRFSNVNITAPGDSHNTDGFDLWNTKNVVFEDSVISVGDDCIAIKAQCSYINVTRLTCGPGHGISIGSLGVDQNYETAEEIHVKNCTFKGVTNGARIKTWEGAPGYARKISFENIILIDAENPIIIDQHYGTKHPNNNSTTKQTTLQQPTQLELLRQTHNLQHPFQPMTCPFSDEPAITCNSTAHRGKEILQGQEQQQTPKGSQVTKSVRRNNFVSPCLCFTRLNFGLAIKESSYNVMNYGAKGDGKSDDANAFLSAWKNACGVEGVSTLIIPKGKVFMLKDLELKGPCKATSIHIQLLGNIVAPNMDQWGKDKIRLIRISNVKSLKIDGEGKIEGNGSSWWQKCRNCKRPRLLEFYACNDLSVSYVNLANSPGAHISINSGDRSRFVHMNINAPSNSPNTDGFIISGSRNVVFEDSTIATGDDCIAIKAGSSYINATRLACGPGHGISVGSLGENKRRDTVEEVHVKNCTFSGTTNGARIKTWEGGSGYVRKVTFEDIKLIKTGYPIVIDQHYGTKNPNKNAGSLQISEVTFKGFEGTSADGRAISLSCSSNGCFNIILDQINIVSSNPKMKAQASCNNAHGRVGKVIPNVPCMLK 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g0168 1267 ProSitePatterns Polygalacturonase active site. 454 467 IPR000743 GO:0004650|GO:0005975
Lal14g0168 1267 ProSitePatterns Polygalacturonase active site. 1109 1122 IPR000743 GO:0004650|GO:0005975
Lal14g0168 1267 Gene3D - 413 538 IPR012334 -
Lal14g0168 1267 Pfam Glycosyl hydrolases family 28 414 534 IPR000743 GO:0004650|GO:0005975
Lal14g0168 1267 Pfam Glycosyl hydrolases family 28 932 1252 IPR000743 GO:0004650|GO:0005975
Lal14g0168 1267 Pfam Glycosyl hydrolases family 28 338 412 IPR000743 GO:0004650|GO:0005975
Lal14g0168 1267 Pfam Glycosyl hydrolases family 28 62 324 IPR000743 GO:0004650|GO:0005975
Lal14g0168 1267 Pfam Glycosyl hydrolases family 28 548 812 IPR000743 GO:0004650|GO:0005975
Lal14g0168 1267 Gene3D - 539 820 IPR012334 -
Lal14g0168 1267 PANTHER - 5 322 - -
Lal14g0168 1267 PANTHER - 322 412 - -
Lal14g0168 1267 PANTHER - 536 809 - -
Lal14g0168 1267 PANTHER - 408 534 - -
Lal14g0168 1267 PANTHER - 897 1265 - -
Lal14g0168 1267 ProSitePatterns Polygalacturonase active site. 725 738 IPR000743 GO:0004650|GO:0005975
Lal14g0168 1267 SMART pbh1 477 498 IPR006626 -
Lal14g0168 1267 SMART pbh1 695 716 IPR006626 -
Lal14g0168 1267 SMART pbh1 210 231 IPR006626 -
Lal14g0168 1267 SMART pbh1 506 527 IPR006626 -
Lal14g0168 1267 SMART pbh1 1161 1182 IPR006626 -
Lal14g0168 1267 SMART pbh1 668 694 IPR006626 -
Lal14g0168 1267 SMART pbh1 292 313 IPR006626 -
Lal14g0168 1267 SMART pbh1 424 445 IPR006626 -
Lal14g0168 1267 SMART pbh1 263 284 IPR006626 -
Lal14g0168 1267 SMART pbh1 748 769 IPR006626 -
Lal14g0168 1267 SMART pbh1 1079 1100 IPR006626 -
Lal14g0168 1267 SMART pbh1 1132 1153 IPR006626 -
Lal14g0168 1267 Gene3D - 899 1262 IPR012334 -
Lal14g0168 1267 Gene3D - 323 412 IPR012334 -
Lal14g0168 1267 Gene3D - 25 322 IPR012334 -
Lal14g0168 1267 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 408 534 - -
Lal14g0168 1267 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 5 322 - -
Lal14g0168 1267 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 322 412 - -
Lal14g0168 1267 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 536 809 - -
Lal14g0168 1267 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 897 1265 - -
Lal14g0168 1267 SUPERFAMILY Pectin lyase-like 901 1265 IPR011050 -
Lal14g0168 1267 SUPERFAMILY Pectin lyase-like 538 810 IPR011050 -
Lal14g0168 1267 SUPERFAMILY Pectin lyase-like 31 321 IPR011050 -
Lal14g0168 1267 ProSitePatterns Polygalacturonase active site. 240 253 IPR000743 GO:0004650|GO:0005975
Lal14g0168 1267 SUPERFAMILY Pectin lyase-like 321 533 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g0168 Lal-Chr14 1820116 1865064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g0168 539 803 Glycoside Hydrolase AT5G27530 47.388 1.00e-68 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g0168 K01184 - qsu:112032446 529.635