Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0397 ATGCAAAGGTTAATCACTTGTATCTTGATTCTAGGTTTTATTTCAGCCACATTCAGCAATGCTGAAACCCAAGTAAAATTTTTTAATGTGATGGATTTTGGAGCTCATGGTGATGGCACAAGTGATGATTCAAATGCAATTGCAAAAGCATGGCAAGGTGTGTGTGAAGATCAAGGGCCAGCAAGTCTACTTATACCTTTAAGCAAAATATTTTTGGTGAAAAGATTAAACATAAGTGGTCCATGCAAAACCCCAAATGTTGGCATTAAGTTTGAAGGGAAAATAGTAGCTCCATCTATGAATGAATGGGTTGGTGATTCTTTTAGTTGGATTCAGATATTTAATGTAAATGGTCTAACAATTGATGCTGATGGAGGAAGCATTGATGGCAATGGTTCTACTTGGTGGGAGAAATGCAGAAAATGCAGAAGACCAACATCCTTGCGTTTCCATGGTTGCAATGGTCTTACTGTGAAATCTCTGAGTATGAGTAACAGCCCTGGAGCTCACATATCTGTAAATGGCTTGGATGGTGCACTCTTCTCTCAGATCAATATCAATTCTCCTCCAAATAGCCCTAACACTGATGGCTTTGACATTGCTGGTTCCAAAAATGTAGCAATTGAAGATTCCACTCTTGCAACAGGTGATGATTGTATTGCGATCAATGGTGGTTGTTCTTATATCAATGCCACTAGACTTGTTTGCCAAGGAGGCCATGGAATAAGCATTGGAAGCCTTGGTAGAAATCAATCTCATGAGACAGTTGAAGAGGTACATGTATGGAATTGCAGTTTCATTGACACTACAAATGGTGCAAGAATCAAGACATGGCCGGGTGGATCAGGCTATGCAAGAAAAATCACGTATGAGGAAATCATACTAGAAGATGTTCAAAATTCAATTATTATAGACCAATTCTATGGGATTAAAACTCCAAATGAAGTGCCAAATAAAGTGGAAGATGCAGTGAAGGTGAGTGAAGTGACTTTCAGAGGGTTCAAGGGCACTTCTGCCAGTGCCAAGGCAATTAACTTGAACTGTAGCCCATCTGGTTCTTTTGCCTTTTGCAAGAATATGGTTAATGGGACGTTTGTAGACACTGTTCCAAAAGTATCTTGTGTATAA 1128 0.3927 MQRLITCILILGFISATFSNAETQVKFFNVMDFGAHGDGTSDDSNAIAKAWQGVCEDQGPASLLIPLSKIFLVKRLNISGPCKTPNVGIKFEGKIVAPSMNEWVGDSFSWIQIFNVNGLTIDADGGSIDGNGSTWWEKCRKCRRPTSLRFHGCNGLTVKSLSMSNSPGAHISVNGLDGALFSQININSPPNSPNTDGFDIAGSKNVAIEDSTLATGDDCIAINGGCSYINATRLVCQGGHGISIGSLGRNQSHETVEEVHVWNCSFIDTTNGARIKTWPGGSGYARKITYEEIILEDVQNSIIIDQFYGIKTPNEVPNKVEDAVKVSEVTFRGFKGTSASAKAINLNCSPSGSFAFCKNMVNGTFVDTVPKVSCV* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0397 375 Pfam Glycosyl hydrolases family 28 55 350 IPR000743 GO:0004650|GO:0005975
Pvu10g0397 375 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 359 - -
Pvu10g0397 375 ProSitePatterns Polygalacturonase active site. 233 246 IPR000743 GO:0004650|GO:0005975
Pvu10g0397 375 PANTHER - 1 359 - -
Pvu10g0397 375 Gene3D - 14 369 IPR012334 -
Pvu10g0397 375 SUPERFAMILY Pectin lyase-like 17 374 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0397 Pvu-Chr10 5594993 5599441 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0397 1 361 Glycoside Hydrolase AT5G44840 40.274 1.44e-89 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0397 K01184 - gmx:100820332 379.793