Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01092 ATGCAAACATTGATTGCTTGTCTCTGTCTTTTGATTCTTAGTTTTGTTTCACCATGTTTATGTGGAATGTGGATTGTTGGAACTGAAAACAGAACTTATAATGTGATAGACTATGGTGCTCATGGTGATGGCAAATCTGATGATTCTGAGGCTTTTGTAAGTGCATGGAATGCTACGTGTGGAGCAGAAGAAGCATCAACTCTTCTTATACCACCAAATGGAAAATTCTTGGTAAAAGTCATAAACTTTAGAGGCCCTTGCAATGCCACAAGTGTTAATATTCAGCTTCAAGGGAGAATAGTTGCACCAGCCATGGATGAATGGCCAAGAGGTCTCACTAATAATGAAATCACCAATTTGATTGTAATATCAAACGTTAGTAGTCTCTCAATTAATGGAAGTGGAGGATCAATCGATGGCTATGGTTCTTCTTGGTGGCAATGCACGAATTGTTATAGACCAACGATTCTTAGATTCAGATATTGTAGTGATCTTACTGTTTTTAATCTTAACATCACCAACAGTCCAAAAGCTCACATAAGGGTCAATGGATGTGAGAATGCCACATTCTCCAATATCACCATTCATTCTCCTGGTGACAGCCCCAACACTGATGGATTTGACATTTATACTTCAAAAAATATCTTGATTCAAAATTCCACTATAGCATGTGGTGATGATTGTATTGCCATCAGTGGTGGTTCTTCCTACATTAATGCCACTGGAATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGCAGCCTGGGAAGAAACCAAGCTTATGATACAGTGGAAGAAGTTTATGTAAAAAATTGCAGCTTCACCAACACTGAAAATGGAGCAAGAATCAAGACAGTCCCGGGTGGATCAGGTTATGCCAGAAACATCACTTTTGAGAACATAACATTAACACAGGCTCGCAACCCTATAATCATAGACCAGTACTATGACAGAAAATATTTAACGAATGCATCAGTGAAGGTGAGTGATGTGACATTCAGTAGATTTAATGGAACATCTGAGAAGGAGCTAGCTATTACCTTGAACTGTTCCTCATCAGGTTGTTTCAACATTGCATTGGATCATATCAACATTGTTTCTGCTCAACCAGAAAAACCAGTTTCTTGTTTTTGTAACAATGCTCATGGAACAGCTACAAGCACTGAAGAATAA 1176 0.3869 MQTLIACLCLLILSFVSPCLCGMWIVGTENRTYNVIDYGAHGDGKSDDSEAFVSAWNATCGAEEASTLLIPPNGKFLVKVINFRGPCNATSVNIQLQGRIVAPAMDEWPRGLTNNEITNLIVISNVSSLSINGSGGSIDGYGSSWWQCTNCYRPTILRFRYCSDLTVFNLNITNSPKAHIRVNGCENATFSNITIHSPGDSPNTDGFDIYTSKNILIQNSTIACGDDCIAISGGSSYINATGIACGPGHGISIGSLGRNQAYDTVEEVYVKNCSFTNTENGARIKTVPGGSGYARNITFENITLTQARNPIIIDQYYDRKYLTNASVKVSDVTFSRFNGTSEKELAITLNCSSSGCFNIALDHINIVSAQPEKPVSCFCNNAHGTATSTEE 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01092 391 PANTHER - 31 384 - -
Spst4g01092 391 SUPERFAMILY Pectin lyase-like 25 387 IPR011050 -
Spst4g01092 391 SMART pbh1 265 286 IPR006626 -
Spst4g01092 391 SMART pbh1 212 233 IPR006626 -
Spst4g01092 391 SMART pbh1 294 315 IPR006626 -
Spst4g01092 391 SMART pbh1 185 211 IPR006626 -
Spst4g01092 391 ProSitePatterns Polygalacturonase active site. 242 255 IPR000743 GO:0004650|GO:0005975
Spst4g01092 391 Gene3D - 26 391 IPR012334 -
Spst4g01092 391 Pfam Glycosyl hydrolases family 28 60 383 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01092 Spst-Chr4 43766412 43770362 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01092 31 390 Glycoside Hydrolase AT5G27530 46.322 1.09e-97 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01092 K01184 - gmx:100820332 478.018