Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0210 ATGGAATATGGTGCTCGTGGTGATGGCAAATCTGATGATTCACATATTCAAGGGAAAATAATTGCACCTCCTAAGAAATCATGGAAATCAGGGTTGGGTTGGATTAGGATCCAATATGTAAATGGTCTCACAATTGATGGCACAGGAGGAGGAATTGACGGCTATGGTTCTACATGGTGGTCATGCATAAGTTGCCTTCGACCTATAGTCTTGTCTTTCCATTCTTGCAATGATCTTAGTGTTAGAAAACTAAAGATCACCAATAGCCCGGGAGGTCATATAGCCATAAATGGTTGCTACGGTGCAAAATTCTCCAATGTAGTAATTGATTCTCCTGCTCATAGCCCCAACACTGATGGATTTGACATTTCTGCTTCGAAGAATATCGTGATAGAAGATTCAACCATTCAAGCAGGTGATGATTGTATTGCCCTCAATGGTGGTTCTTCTTACATCAATGTTACCCGTGTTTTTTGTGGACCCGGCCATGGAATAAGCATTGGCAGCCTTGGTAAACATAATTCTCATGAAATAGTTGAAGAAGTTTATGTACGGAACTGCAGCTTCATTGATACTACAAATGGAGCAAGAATCAAGACATTTCCTGGTGGATCGGGATATGCAAGGAAGATTATTTTTGAGCAAATCCAACTTAAAAATGTTTACAATCCAATAATTATAGACCAACACTATGGTTCTCAAGTTGCAACGAATTCAGCCCTGCAAGTGAATGATGTGACATATCGTGGATTTAACGGAACTTGTGCCGGTGATATTGCTATTGATTTGGATTGCATGGATTGTTTCAACATTGTATTGGATCAAATTAACATTGTCTCTTCTCAAAAGAGAAATAAGGTTTCTGCTATTTGCAAAAATTTCCATGGAAAAATTGATGATTCCGTTGTTCCAAAGGCATTTGTCAGTGCATGGAGTAGTGCGTGTAAAGCAGCAGAGATGTCAACACTGGTCATACCCGTAGGAAAAACATTTATGGTGTCGAAACTAAGTTTTAGCGGTCCTTGCACCAACAAAAATATTCTTATTCAGCTTGAAGGGAAAATAGTTGCACCTTCAAAGGTAGGTTGGAAAGCTCAGTCATATTGGATTACCGTGCAATCTGTAGAAGGACTCACAATTGAAGGTAATGGTCGAGGAGTACTCGATGGAGATGGTTCGACTTGGTGGCAATGCAAATCATGTGCTCGACCTGGGGTCTTCTTGTTTCATTCATGCAAGGGTCTCAATGTTAGTAATCTGAGTATCACTAATAGTCCACGTTCCCATGTAGCTGTTAATATGTGCAATGGTGCAACATTTTCTAATATATCTATTAATTCACCTGGTACTAGCCCCAATACTGATGGGTTTGACATTGCTTTATCCACTCATATTGTGATACATGATTCCAACATAAAATCTGGTGATGATTGTATTGCAGTCAATGGTGGTTCTACTTTTGTCAATGCTATAAGGATTACTTGTGGACCTGGCCATGGAATAAGTGTTGGAAGCCTTGGTAAAAACGGAACTGAGGATAAAGTTTCTGATATTCATGTGCGAAATTGCACATTCAATGAAACTCAAAATGGAGCACGAATCAAGACAATTCCTGGTGGATCAGGTTATGCAAAACAGATTACATTTGAGCAAATCATCCTTGTTAATGTTAGGAATCCAATAATTATAGATCAGGATTACGGTATTGGTCGGAAGGGTGCAAATGTGTCGGTGAGTTCAGTGAAATTTCGAGGATTTACCGGAACTTCTGCTAGCGGCTTAGCTATTCAGTTAAATTGTAGCTCTTCTGGTTGTTATGACATTTTATTGGAACAAAACAACATTGTTTCTGCTCAACCAGAAAAGGCGGCTTCTTCTTTTTGTACAAATGCCCATGGAACTGCTAGAAATACTGTTCCAAATATCCCTTGCTTATCAAATTAA 1944 0.3915 MEYGARGDGKSDDSHIQGKIIAPPKKSWKSGLGWIRIQYVNGLTIDGTGGGIDGYGSTWWSCISCLRPIVLSFHSCNDLSVRKLKITNSPGGHIAINGCYGAKFSNVVIDSPAHSPNTDGFDISASKNIVIEDSTIQAGDDCIALNGGSSYINVTRVFCGPGHGISIGSLGKHNSHEIVEEVYVRNCSFIDTTNGARIKTFPGGSGYARKIIFEQIQLKNVYNPIIIDQHYGSQVATNSALQVNDVTYRGFNGTCAGDIAIDLDCMDCFNIVLDQINIVSSQKRNKVSAICKNFHGKIDDSVVPKAFVSAWSSACKAAEMSTLVIPVGKTFMVSKLSFSGPCTNKNILIQLEGKIVAPSKVGWKAQSYWITVQSVEGLTIEGNGRGVLDGDGSTWWQCKSCARPGVFLFHSCKGLNVSNLSITNSPRSHVAVNMCNGATFSNISINSPGTSPNTDGFDIALSTHIVIHDSNIKSGDDCIAVNGGSTFVNAIRITCGPGHGISVGSLGKNGTEDKVSDIHVRNCTFNETQNGARIKTIPGGSGYAKQITFEQIILVNVRNPIIIDQDYGIGRKGANVSVSSVKFRGFTGTSASGLAIQLNCSSSGCYDILLEQNNIVSAQPEKAASSFCTNAHGTARNTVPNIPCLSN* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0210 647 SMART pbh1 99 125 IPR006626 -
Mtr8g0210 647 SMART pbh1 462 483 IPR006626 -
Mtr8g0210 647 SMART pbh1 126 147 IPR006626 -
Mtr8g0210 647 SMART pbh1 435 461 IPR006626 -
Mtr8g0210 647 SMART pbh1 573 598 IPR006626 -
Mtr8g0210 647 SMART pbh1 179 200 IPR006626 -
Mtr8g0210 647 SMART pbh1 149 169 IPR006626 -
Mtr8g0210 647 SMART pbh1 515 536 IPR006626 -
Mtr8g0210 647 Gene3D - 300 643 IPR012334 -
Mtr8g0210 647 Pfam Glycosyl hydrolases family 28 16 295 IPR000743 GO:0004650|GO:0005975
Mtr8g0210 647 Pfam Glycosyl hydrolases family 28 315 632 IPR000743 GO:0004650|GO:0005975
Mtr8g0210 647 SUPERFAMILY Pectin lyase-like 2 306 IPR011050 -
Mtr8g0210 647 PANTHER - 304 645 - -
Mtr8g0210 647 PANTHER - 15 303 - -
Mtr8g0210 647 SUPERFAMILY Pectin lyase-like 305 645 IPR011050 -
Mtr8g0210 647 ProSitePatterns Polygalacturonase active site. 492 505 IPR000743 GO:0004650|GO:0005975
Mtr8g0210 647 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 304 645 - -
Mtr8g0210 647 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 15 303 - -
Mtr8g0210 647 ProSitePatterns Polygalacturonase active site. 156 169 IPR000743 GO:0004650|GO:0005975
Mtr8g0210 647 Gene3D - 9 299 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0210 Mtr-Chr8 2397967 2410084 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0210 296 634 Glycoside Hydrolase AT5G17200 42.935 2.97e-86 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0210 K01184 - qsu:112032446 522.316