Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1647 ATGCAGGTACTTATTATCAATTCATGCAATTCTCTTAATGTTAGTAACTTAAATATCATTAATAGTCCAAAATCTCACATACACGTAAATGGTTGTAAGGGTGCCACATTCTCTCATATTAATATTACTGCTCCTGGTGAAAGTCCCAACACTGATGGATTTGATATTTCTACTTCCAAAAATATTTTGATTGAAGATTCCACTATAGGTACTGGTGATGATTGTATTGCCATTAGTGGTGGTTCATCTTACATCAATGTTACTAGAATTTTTTGTGGACCCGGCCATGGAATAAGCATTGGCAGCTTGGGTAAAAATTTTGATACAGTCCATGATGTTCATGGCGGAGCTGGTTACGCAAAACAAATCATTTTTGAACAAATTACGTTACAAAAAACTCGCAACCCAATAATTATAGATCAAAACTATGGTGATTTAATGAATGAAGAAGTTCAAGTGAGCAATGTGATATACCGTGGATTTCAAGGAACATCTTTAGATGAAAGAGCTATTACCTTGGATTGTAGCTCAACAGGTTGTTATGGTATTGTATTGGATGAAATTAACATCGTCTCTTCTATTGAGGGAAAGTCAGCTTCATGTGTTGGCAATAATGCCCATGGAACAATTACATCTTCAGTTCCAAATTGTTCCTGTTTATCGTCATGA 669 0.3513 MQVLIINSCNSLNVSNLNIINSPKSHIHVNGCKGATFSHINITAPGESPNTDGFDISTSKNILIEDSTIGTGDDCIAISGGSSYINVTRIFCGPGHGISIGSLGKNFDTVHDVHGGAGYAKQIIFEQITLQKTRNPIIIDQNYGDLMNEEVQVSNVIYRGFQGTSLDERAITLDCSSTGCYGIVLDEINIVSSIEGKSASCVGNNAHGTITSSVPNCSCLSS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1647 222 SUPERFAMILY Pectin lyase-like 4 220 IPR011050 -
Aed2g1647 222 ProSitePatterns Polygalacturonase active site. 89 102 IPR000743 GO:0004650|GO:0005975
Aed2g1647 222 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 113 220 - -
Aed2g1647 222 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 4 114 - -
Aed2g1647 222 PANTHER - 113 220 - -
Aed2g1647 222 PANTHER - 4 114 - -
Aed2g1647 222 Pfam Glycosyl hydrolases family 28 3 113 IPR000743 GO:0004650|GO:0005975
Aed2g1647 222 Pfam Glycosyl hydrolases family 28 114 203 IPR000743 GO:0004650|GO:0005975
Aed2g1647 222 Gene3D - 1 219 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1647 Aed-Chr2 20833690 20835042 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1647 1 190 Glycoside Hydrolase AT5G27530 48.165 3.38e-53 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1647 K01184 - gmx:100818729 329.717