Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01016 atgaaAGGGCTAACTGctttcattttgattcttgCATTTGCTTCACCCCATTTATGTTTGAAGTTGAACCCTAAAAGCAAATACACTTTCAATGTCATGGATTATGGTGCTGTTGGTGATGGAAAATCTGATGATTCCCAAGCAATTAAAAAAGCATGGTTGGATACATGTGGAGCAGTAACTTCTGGGGCTGCAACTCTTGTTTTTCCCCAAGGAAAGACATTCTACATGAAGCCAATGGATTTTCAGGGTGCTTGCAAGGCCAAATACATAAACATTCAGCTCATATATATCCATGCTTGCAATGATCTAACTATAGATGGTCTGAGGAACATTGATAGTCCAAGAAATCACATGGCTATACATTTCTGCAGTGGTGTGAGAATCTCTAATCTCCATATTCAAGCTCCTGGTGAGAGCCCTGGCACAGATGGGATTAACATTGGTCTAACAACAAATGTCAACATAAAAGATTCCTCTATATCAAGTGGTGATGATTGTATTTCTTTGCTTAATGGCACCTCTTTTGTCTATATCAGCGGGATTATTTGTGGACCAGGCCATGGAATAagCATTGGAAGTCTTGGAATGAATAGAGCTATTTATGAAACAGTTCAAGATGTGCATGTTTGGAATTGCAGCTTCATTGGCACTCTAAATGGTGTAAGAATCAAAACATATGAGGGTGGAAGAGGCTATGTAGGGAAAGTCACATTTGAGAAAATCACAATGGTAGCATCTCATAACCCTATCATTATAGACCAGTACTACTTCAGCGgaggaaaaaataacaagAATACAGCAGTGGAAGTGAGTGATATTACATTCCGTGGTATTCATGGAACTTGTGCTGATGAGAAAGCCATTGAGTTGAACTGCAACAAAACGTTTGGTTGCCGCAACCTTATATTAGACAACATTAACATAACTTCATCTGTTCCTGGAAAGAAAACAGTTGCCTCTTGCTTCAATGCTCATGGAGGAGCTGCATCTGTTATTCCCAGTAACCCTTGCCTGCAATA 1022 0.3826 MKGLTAFILILAFASPHLCLKLNPKSKYTFNVMDYGAVGDGKSDDSQAIKKAWLDTCGAVTSGAATLVFPQGKTFYMKPMDFQGACKAKYINIQLIYIHACNDLTIDGLRNIDSPRNHMAIHFCSGVRISNLHIQAPGESPGTDGINIGLTTNVNIKDSSISSGDDCISLLNGTSFVYISGIICGPGHGISIGSLGMNRAIYETVQDVHVWNCSFIGTLNGVRIKTYEGGRGYVGKVTFEKITMVASHNPIIIDQYYFSGGKNNKNTAVEVSDITFRGIHGTCADEKAIELNCNKTFGCRNLILDNINITSSVPGKKTVASCFNAHGGAASVIPSNPCLQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01016 340 PANTHER - 96 339 - -
Bva02g01016 340 PANTHER - 10 95 - -
Bva02g01016 340 PANTHER - 96 339 - -
Bva02g01016 340 PANTHER - 10 95 - -
Bva02g01016 340 Pfam Pectate lyase superfamily protein 30 73 IPR024535 -
Bva02g01016 340 Pfam Glycosyl hydrolases family 28 88 328 IPR000743 GO:0004650|GO:0005975
Bva02g01016 340 ProSitePatterns Polygalacturonase active site. 181 194 IPR000743 GO:0004650|GO:0005975
Bva02g01016 340 SMART pbh1 234 255 IPR006626 -
Bva02g01016 340 SMART pbh1 205 226 IPR006626 -
Bva02g01016 340 SMART pbh1 124 150 IPR006626 -
Bva02g01016 340 SMART pbh1 174 194 IPR006626 -
Bva02g01016 340 SMART pbh1 151 172 IPR006626 -
Bva02g01016 340 SUPERFAMILY Pectin lyase-like 26 339 IPR011050 -
Bva02g01016 340 Gene3D - 20 91 IPR012334 -
Bva02g01016 340 Gene3D - 92 337 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01016 Bva-Chr2 14466872 14470634 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01016 1 327 Glycoside Hydrolase AT5G17200 36.165 6.83e-83 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01016 K01184 - rcu:8287292 323.553