Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01410 ATGCAACGGCTAATAATCTCTTTTATCTTTCTTCACTTTTTTGTATCTCCCACTTTGTGTATCCAAAGCAATGTTCTAACCCAGATGACATATGTCAATGTGATGGACCAAGGAGCTCGTGGCGATGGCACAACTGATGATTCAAATGCAATTTTAAGTGCATGGCAGAGTGTGTGTGGAATGTCAGGGCCAACAACTTTACTCATACCTTCAGGAAAAGTATTTTTTGTGAAAAGATTAGGGTTCAATGGTCCTTGCAAGGCACAAAGTGTTGGCATTCAGTTAGCAGGGAAAATAGTTGCTCCAACTATAGATGCATGGGTTGGTGATAAGGGAAGTTGGATTGTGATCTCAAATGTAAATGGATTAACAATTGATGGGCAAGGAGGAATTATCGATGGCAATGGTTCTTCTTGGTGGGAGAACTGCAAAACTTGTCAACGACCAACATCATTGCGTTTCCAAAATTGTAATGGTCTTGTTGTGAATTCTCTAAGCATGACAAATAGTGCTCAAGCTCACATATCCGTAAGTAGTTGTGTTGGAGCAAAATTCTCTCAAATGAATATTACTGCTCCTGAGAACAGTCCCAACACTGATGGCTTTGATATTGCTGGGTCCAAATTCATAACCATACAAGATTCTACTATAGCAACTGGTGATGATTGCATTGCCATCAACGGTGGCAGCTCCAACATCAATGCCACTAGGCTTTTCTGTGGACCTGGCCATGGGATAAGTGTTGGCAGTCTGGGTAGAAATGGAGCTCATGAGACAGTTGAAGAGGTTTATGTATATAATTGCAGTTTCACTGGAACTACAAATGGAGCAAGAATTAAAACAGTGCCAGGTGGATCAGGTTATGCAAGAAAAATCACTTTCGACCAAATCATATTAAACAATGCTCAAAATCCAATAATTATAGACCAAAATTATAACGCTATAGCGCCAAATGCAGGGCAAACAGTGATGGTTAGTGAAGTGACTTATCGTGGATTTGTTGGAACTTCGGCTAAGGACTTGGCAATACTCTTGAAATGTAGCACATTGGGTTGTTTCAATATTACATTTGATAATGTTGACATTGTATCCTCAGAACCAGGAAAACCAGCCTATGCATCTGTAAATAATGCCCATGGAACAGTTACTAATACTGTTCCAAAATTCTCTTTGTTGTCATGA 1182 0.3968 MQRLIISFIFLHFFVSPTLCIQSNVLTQMTYVNVMDQGARGDGTTDDSNAILSAWQSVCGMSGPTTLLIPSGKVFFVKRLGFNGPCKAQSVGIQLAGKIVAPTIDAWVGDKGSWIVISNVNGLTIDGQGGIIDGNGSSWWENCKTCQRPTSLRFQNCNGLVVNSLSMTNSAQAHISVSSCVGAKFSQMNITAPENSPNTDGFDIAGSKFITIQDSTIATGDDCIAINGGSSNINATRLFCGPGHGISVGSLGRNGAHETVEEVYVYNCSFTGTTNGARIKTVPGGSGYARKITFDQIILNNAQNPIIIDQNYNAIAPNAGQTVMVSEVTYRGFVGTSAKDLAILLKCSTLGCFNITFDNVDIVSSEPGKPAYASVNNAHGTVTNTVPKFSLLS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01410 393 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 5 389 - -
Cca01g01410 393 ProSitePatterns Polygalacturonase active site. 237 250 IPR000743 GO:0004650|GO:0005975
Cca01g01410 393 PANTHER - 5 389 - -
Cca01g01410 393 Pfam Glycosyl hydrolases family 28 59 379 IPR000743 GO:0004650|GO:0005975
Cca01g01410 393 Gene3D - 20 390 IPR012334 -
Cca01g01410 393 SUPERFAMILY Pectin lyase-like 22 390 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01410 Cca-Chr1 28748577 28751310 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01410 8 382 Glycoside Hydrolase AT5G17200 43.382 1.13e-104 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01410 K01184 - gmx:100782390 417.927