Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0819 ATGAAACATGTATATGAATCACTCAGTATTGGAAGCCTTGGTAGAAATAAATCCTATGAGACAGTTGAAGAGATACATGTGCAAAACTGCAGCTTCATTGGCACCACAAATGGAGCAAGAATCAAGACATGGCCAGGTGGATCAGGTTATGCAAGAAAAATCATGTTTGAGGAAATCATATTGCAAGATGCTAAGAATTCAATTATTATAGACCAACATTACGGCTTTAAAACTCTAAGTGAAGTGGGAGATGATGCAGTGAGGGTGAGTGAAGTGACTTATAGAGGGTTCAATGGAACTTCTGCAAGTGAGAAAGCAATTAATTTGAACTGTAGCCCATCTGGTTGTTTCAACATTACATTGGATCAGATTTACATTGTCTCTTCAAAATCTTCCAATTCCAAAGATGCTTATGCTTTTTGTAAGAACATTGTTAATGGGACGATTGGATCCACGGTTCCTAAAGTTGCATCAAAATCTTTGAATAATTCTTGGTCGTAA 501 0.3693 MKHVYESLSIGSLGRNKSYETVEEIHVQNCSFIGTTNGARIKTWPGGSGYARKIMFEEIILQDAKNSIIIDQHYGFKTLSEVGDDAVRVSEVTYRGFNGTSASEKAINLNCSPSGCFNITLDQIYIVSSKSSNSKDAYAFCKNIVNGTIGSTVPKVASKSLNNSWS* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0819 166 Pfam Glycosyl hydrolases family 28 8 134 IPR000743 GO:0004650|GO:0005975
Vra9g0819 166 PANTHER - 8 154 - -
Vra9g0819 166 Gene3D - 3 141 IPR012334 -
Vra9g0819 166 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 8 154 - -
Vra9g0819 166 SUPERFAMILY Pectin lyase-like 8 157 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0819 Vra-Chr9 9559352 9560676 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0819 8 128 Glycoside Hydrolase AT5G44830 45.082 4.84e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0819 K01184 - vra:106773269 335.88