Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0711 ATGCAAAGGCTAATCACTTGTCTTTTGATTCTTGGTTTtgtttcaccatgtttatgtgTGAGGTCGACGGTTGgaaccaaaaacacattttataatGTGATGGACTATGGTGCTCATGGCGATGGCAAATCTGATGATTCCCAGGCGTTTTTAAGTGCATGGCAGCACATGTGTGGAACACAAGGGACACCAACTCTAGTTATACCACCAAAAGGAGAATTCATGGTGAGGAACATAAAGCTGAACGGTCCTTGCAAGGCCACAAGTATTCATATTCAGCTTCAAGGGAAAATAGTTGCACCTGCCAAGGATGCATGGGTAAAAGGTCTCACAATTGATGATATGTCCACTTTGATTTTGATCTCAAACGTAAACGGTCTCACAATTGATGGAACCGGAGGACTAATCGATGGCAATGGTTCTACTTGGTGGAAATGCAATAGTTGTTCACGACCAGCGGTCTTTAGTTTTGAATCTTGCAATGATCTTACTGTTAGTCACCTGAGCATCACTAATAGTCCACGAGCTCACATAACAATAGATGGTTGTAAGGATGTCATATTCTCTCATATCGATATTCGTGCTCCTGCTGACAGCCCCAACACTGATGGATTTGACATTTCTTCTTCCAATAATATCTCGATTGAAGATTCCACTATAGAATCTGGTGATGATTGTATTGCCATCAATGGTGGATCTTCTTACATCAAAGCTACTGGGATTGCTTGTGGACCAGGTCATGGAATAAGCATTGGCAGCCTAGGTAGAAACAATGCACATGATACAGTCGAGGAAGTTTATGTACGAAATTGCAGCTTCAAGAACACTACAAATGGAGCAAGAATCAAGACATGCCCAggtGGATCCGGTTATGCAAGAAAAATCACTTTTGagcaaatcaaattaataaatgctcACAATCCAATAATTATAAACCAGTACTATGGTAGTAATTATTCAACGAATGGAGCAGTGGAAGTGAGCAATGTGACATACCGTGGGTTTCAAGGAACATCAGCGGATGACAAAGCTATTAACTTAGATTGTTGCTCATCAGGTTGTTTCAACATTGTATTGGATCAAATTAACATTGTCTATTCTAAACCAGGAAAGAAGGTTTATGCTTCTTGCAATAATGCCCATGGAACAGTTACATCTACTGTTGCAGGTTGCTCTTGCAGCttattcaaatga 1194 0.3836 MQRLITCLLILGFVSPCLCVRSTVGTKNTFYNVMDYGAHGDGKSDDSQAFLSAWQHMCGTQGTPTLVIPPKGEFMVRNIKLNGPCKATSIHIQLQGKIVAPAKDAWVKGLTIDDMSTLILISNVNGLTIDGTGGLIDGNGSTWWKCNSCSRPAVFSFESCNDLTVSHLSITNSPRAHITIDGCKDVIFSHIDIRAPADSPNTDGFDISSSNNISIEDSTIESGDDCIAINGGSSYIKATGIACGPGHGISIGSLGRNNAHDTVEEVYVRNCSFKNTTNGARIKTCPGGSGYARKITFEQIKLINAHNPIIINQYYGSNYSTNGAVEVSNVTYRGFQGTSADDKAINLDCCSSGCFNIVLDQINIVYSKPGKKVYASCNNAHGTVTSTVAGCSCSLFK 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0711 397 ProSitePatterns Polygalacturonase active site. 240 253 IPR000743 GO:0004650|GO:0005975
Ssu2g0711 397 PANTHER - 1 394 - -
Ssu2g0711 397 Pfam Glycosyl hydrolases family 28 58 385 IPR000743 GO:0004650|GO:0005975
Ssu2g0711 397 SUPERFAMILY Pectin lyase-like 24 394 IPR011050 -
Ssu2g0711 397 SMART pbh1 160 182 IPR006626 -
Ssu2g0711 397 SMART pbh1 183 209 IPR006626 -
Ssu2g0711 397 SMART pbh1 102 131 IPR006626 -
Ssu2g0711 397 SMART pbh1 263 284 IPR006626 -
Ssu2g0711 397 SMART pbh1 210 231 IPR006626 -
Ssu2g0711 397 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 394 - -
Ssu2g0711 397 Gene3D - 18 394 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0711 Ssu-Chr2 38712057 38714848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0711 4 391 Glycoside Hydrolase AT5G17200 41.429 6.48e-101 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0711 K01184 - gmx:100782390 547.354