Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0396 ATGCAAAGGTTAATCACCTGTATCTTGATTCTAGGTTTTATTTCAGCCACATTCAACAATGCTGAAACCCAAGTAAAATATTTTAATGTGATGGATTTTGGAGCTCATGGTGATGGCACAAATAGCCCTAACACTGATGGCTTTGACATTGTTGGTTCCAAAAATGTAGCAATTGAAGATTCCACTCTTGCAACAGGTGATGATTGTATTGCCATCAATGGTGGTTGTTCTTATATCAATGCCACTAGACTTGTTTGCGAAGGAGGCCATGGAATAAGCATTGGAAGCCTTGGTAGAAATCAATCTCATGAGACAGTTGAAGAGGTACATGTATGGAATTGCAGCTTCATTGACACTACAAATGGTGCAAGAATCAAGACATGGCCGGGTGGATCAGGCTATGCAAGAAAAATCACGTATGAGGAAATCATACTAGAAGATGTTCAAAATTCAATTATTATAGACCAATTCTATGGCATTAAAACTCCAAATGAAGTGCCAAATAAAGTGGTATACTTTTGA 522 0.3774 MQRLITCILILGFISATFNNAETQVKYFNVMDFGAHGDGTNSPNTDGFDIVGSKNVAIEDSTLATGDDCIAINGGCSYINATRLVCEGGHGISIGSLGRNQSHETVEEVHVWNCSFIDTTNGARIKTWPGGSGYARKITYEEIILEDVQNSIIIDQFYGIKTPNEVPNKVVYF* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0396 173 ProSitePatterns Polygalacturonase active site. 83 96 IPR000743 GO:0004650|GO:0005975
Pvu10g0396 173 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 40 165 - -
Pvu10g0396 173 PANTHER - 40 165 - -
Pvu10g0396 173 Pfam Glycosyl hydrolases family 28 41 168 IPR000743 GO:0004650|GO:0005975
Pvu10g0396 173 Gene3D - 15 173 IPR012334 -
Pvu10g0396 173 SUPERFAMILY Pectin lyase-like 41 164 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0396 Pvu-Chr10 5562682 5565487 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0396 41 158 Glycoside Hydrolase AT3G15720 61.864 6.90e-42 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0396 K01184 - pvu:PHAVU_010G038000g 359.377