Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01853 ATGCAAACACTAATCACTTTTCTTTTGATTCTTGGTTTTGTTTCACCATGTTTGTGTGTGAGGTGGAGTGTTAGAACCCAAAACAAAACTTATAATGTGAAAGACTATGGTGCTCATGGTGATGGCAAAGCTGATGATTCTGGGGCTTTTCTAAGTGCATGGAAAGACACATGTGGATCATACCAAACACCAACTCTAGTTATACCACCAAATGGAGTATTCTTGCTAAAAGGCATAACCCTAAGTGGTCCTTGCATTGCCACAAGTGTTAATATTCAGCTTCAAGGGAGCATAGTTGCACCTGTGAAGAATGAATGGTTAAAAGTGTTAGGAATGAAAGACCCAATCCAAGACCCAAACCAAGATCTCACAGATGAAAGGTTCAATTTGATTCTAATCTCAAACGTAAGTAGTCTCTCAGTTGATGGAAGTGGAGGAGGATCAATCAATGGCTATGGTTCTACTTGGTGGGATTGCAGAAATTGTGAAAGACCAACGATTCTTAGATTCAAATTCTGTAATGATCTTACTGTTAGTAATCTGAACATCACTAACAGCCCAAAAGCTCACATAAGGATGAATAGTTGTGAGAATGCAACATTTTCTAATATCAGCATTCATTCTCCTGGTGACCGCCCCAACACTGATGGAATTGACATTTTAGCTTCCAAAAATATCTTGATTCAAGATTCCACCATGCAATGTGGTGATGATTGTATTGCCATCAGTGGTGGCTCCTCTCACATCAATGCTACTGGAATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGCAGCCTGGGTAGAAACAAAGCTTATGATACAGTGGAAGAAGTTTATGTAAAAAATTGCACCTTCACAAACACTGAAAATGGAGCAAGAATTAAGACAGTCCCAGGTGGATCAGGTTATGTAAGAAACATCATTTTTGAGAACATCACAGTAGTACAGGCTCAGAACCCAATAATTATAGACCAGTATTATGAAAGTAGAAAACCAATGAATGGAGCATTGAATGTGAGTGATGTGATATTCCGAGGATTCAGTGGATCATCTGCAAAGGAGAATGCTATTAACCTGAATTGCTCCTCATCAGGTTGTTTCGACATTGTGTTGGATCATATTGACATTGTCTCTTCTCCTCCAGGAAAACCAGCTTGTTGTTCTTGCAATAATGCTCATGGAACTGCTACAGACACAGTTCCATATTGTTCTTTACTGTCATGA 1227 0.3936 MQTLITFLLILGFVSPCLCVRWSVRTQNKTYNVKDYGAHGDGKADDSGAFLSAWKDTCGSYQTPTLVIPPNGVFLLKGITLSGPCIATSVNIQLQGSIVAPVKNEWLKVLGMKDPIQDPNQDLTDERFNLILISNVSSLSVDGSGGGSINGYGSTWWDCRNCERPTILRFKFCNDLTVSNLNITNSPKAHIRMNSCENATFSNISIHSPGDRPNTDGIDILASKNILIQDSTMQCGDDCIAISGGSSHINATGIACGPGHGISIGSLGRNKAYDTVEEVYVKNCTFTNTENGARIKTVPGGSGYVRNIIFENITVVQAQNPIIIDQYYESRKPMNGALNVSDVIFRGFSGSSAKENAINLNCSSSGCFDIVLDHIDIVSSPPGKPACCSCNNAHGTATDTVPYCSLLS 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01853 408 Gene3D - 17 405 IPR012334 -
Phco1g01853 408 PANTHER - 28 396 - -
Phco1g01853 408 SMART pbh1 276 297 IPR006626 -
Phco1g01853 408 SMART pbh1 196 222 IPR006626 -
Phco1g01853 408 SMART pbh1 223 244 IPR006626 -
Phco1g01853 408 SMART pbh1 173 195 IPR006626 -
Phco1g01853 408 SMART pbh1 305 326 IPR006626 -
Phco1g01853 408 Pfam Glycosyl hydrolases family 28 58 395 IPR000743 GO:0004650|GO:0005975
Phco1g01853 408 ProSitePatterns Polygalacturonase active site. 253 266 IPR000743 GO:0004650|GO:0005975
Phco1g01853 408 SUPERFAMILY Pectin lyase-like 19 405 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01853 Phco-Chr1 58118117 58121952 Tandem