Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g1641 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g01821 . . . . . . Spst1g03125 . . . . . . . . . . .
Pvu1g1642 . . . Aed4g0201 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g1055 . . . . . . Phco2g01822 . . Pste5g01129 . . . . . . . . . . . . . . .
Pvu1g1643 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g01825 . . . . . . . . . . . . . . . . . .
Pvu1g1645 Acco02g1785 Accr2g01967 Adu06g01188 Aed4g0197 Aev06g0068 Ahy16g0137 Ahy6g1194 Aip06g00132 Alju01g1787 . . Apr4g0006 Arst6g01574 Bach8g00603 Bisa03g0574 Bva04g02805 Car03g02304 Cca03g02184 Dere01g3159 Dod01g2507 Enph2g1340 Glsi02g3080 Gma19g01535 Gma03g01479 Gso19g1350 Gso3g1351 . . . . . . Lapu6g00345 Lasa3g03101 Lele05g1409 Lele06g1267 Lele07g1469 Lele08g1260 Lja1g1054 Mal3g3817 Mepo3g03098 Mesa25g00971 Mibi02g1630 Mtr7g2876 Phac1g02266 Phco2g01827 Prci1g2429 Psa3g1386 Pste5g01148 . Rops8g03077 Seca2g04349 Spst1g03123 Ssu4g1252 Sto8g0684 Tpr6g3475 Trre13g03951 Tsu07g03658 Vian2g02183 Vifa5g02653 Vimu6g02746 Viun1g02077 Vivi6g03886 Vra3g0167
Pvu1g1646 . . Adu06g01189 Aed4g0196 . Ahy16g0136 Ahy6g1195 Aip06g00131 . . . Apr4g0007 . . . . . Cca03g02185 . Dod01g2508 . . Gma19g01536 Gma03g01480 Gso19g1351 Gso3g1352 . . . . . . Lapu6g00346 . . . . . Lja1g1053 . . . . . . Phco2g01828 . . Pste5g01152 Pumo5g02832 Rops8g03078 Seca8g05681 Spst1g03122 Ssu4g1251 . . . . . . Vimu6g02745 Viun1g02078 . Vra3g0168
Pvu1g1647 . . . Aed4g0195 . . . . . . . Apr4g0008 . Bach8g00605 . Bva04g02804 . Cca03g02186 . Dod01g2509 . . Gma19g01537 Gma03g01481 Gso19g1352 Gso3g1353 . . . . . . Lapu6g00347 Lasa6g02386 . . . . Lja1g1052 . . . . . . Phco2g01829 . . Pste5g01164 Pumo5g02833 . Seca8g05680 Spst1g03121 Ssu4g1250 . . . . Vian2g02184 . Vimu6g02744 Viun1g02079 . Vra3g0169
Pvu1g1648 . . Adu06g01191 Aed4g0194 Aev06g0071 Ahy16g0134 Ahy6g1197 Aip06g00129 . . Amo06g0740 Apr4g0009 Arst6g01578 Bach8g00606 . Bva04g02803 . Cca03g02187 . Dod01g2510 . . . Gma03g01482 . Gso3g1354 . . . . . . Lapu6g00348 Lasa6g02385 . . . . Lja1g1051 . . . . . . Phco2g01830 . . . Pumo5g02834 . Seca8g05679 Spst1g03120 Ssu4g1249 . . . . . . . Viun1g02080 . .
Pvu1g1649 Acco02g1781 Accr2g01971 . Aed4g0193 Aev06g0073 . . . Alju01g1782 . . Apr4g0010 . Bach8g00607 Bisa03g0578 Bva04g02802 . Cca03g02188 Dere01g3153 Dod01g2511 Enph2g1337 Glsi02g3075 . Gma03g01483 . Gso3g1355 . . . . . . . Lasa3g03104 Lele05g1404 Lele06g1264 Lele07g1465 Lele08g1256 . Mal3g3820 Mepo3g03103 Mesa25g00968 Mibi02g1626 Mtr7g2878 Phac1g02272 Phco2g01831 Prci1g2433 Psa3g1385 Pste5g01170 Pumo5g02835 Rops8g03080 Seca2g04353 Spst1g03119 Ssu4g1248 Sto8g0686 Tpr6g3474 Trre13g03953 Tsu07g03659 Vian2g02185 Vifa5g02654 Vimu6g02743 Viun1g02082 . Vra3g0170
Pvu1g1650 . . . Aed4g0192 . . . . . . . Apr4g0012 . . . . . Cca03g02189 . Dod01g2512 . . . Gma03g01484 . Gso3g1356 . Lal1g1896 . Lan9g0505 . . . . . . . . . . . . . . . . . . . Pumo5g02837 . . . . . . . . . . . . . .
   
Previous Page 165 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Amo Amo06g0740 Chr06 10497484 10500768 -
Pvu Pvu1g1641 Chr1 41688090 41688299 +
Phco Phco2g01821 Chr2 48755780 48756283 +
Spst Spst1g03125 Chr1 39833815 39837266 -
Pvu Pvu1g1642 Chr1 41704942 41705148 +
Aed Aed4g0201 Chr4 1477353 1477559 -
Lja Lja1g1055 Chr1 10533485 10534395 -
Phco Phco2g01822 Chr2 48762433 48762639 +
Pste Pste5g01129 Chr5 7380382 7380588 +
Pvu Pvu1g1643 Chr1 41721312 41721643 +
Pvu Pvu1g1644 Chr1 41756783 41757199 -
Phco Phco2g01825 Chr2 48787335 48788032 -
Pvu Pvu1g1645 Chr1 41760609 41766072 -
Acco Acco02g1785 Chr02 13952054 13954447 +
Accr Accr2g01967 Chr2 54216368 54218722 -
Adu Adu06g01188 Chr06 15847903 15851111 -
Aed Aed4g0197 Chr4 1447788 1453124 +
Aev Aev06g0068 Chr06 565639 573502 -
Ahy Ahy16g0137 Chr16 1393457 1396811 +
Ahy Ahy6g1194 Chr6 17577604 17580783 -
Aip Aip06g00132 Chr06 1279544 1282273 +
Alju Alju01g1787 Chr01 14474304 14476707 +
Apr Apr4g0006 Chr4 89096 95841 -
Arst Arst6g01574 Chr6 15881600 15884859 -
Bach Bach8g00603 Chr8 3935496 3938493 -
Bisa Bisa03g0574 Chr03 7355817 7359024 -
Bva Bva04g02805 Chr04 24156272 24159208 +
Car Car03g02304 Chr03 69033526 69039308 -
Cca Cca03g02184 Chr03 42531346 42534427 -
Dere Dere01g3159 Chr01 46167252 46171310 +
Dod Dod01g2507 Chr01 64145197 64150316 -
Enph Enph2g1340 Chr2 11528407 11532401 +
Glsi Glsi02g3080 Chr02 79368058 79371146 +
Gma Gma19g01535 Chr19 44703271 44708043 -
Gma Gma03g01479 Chr03 41018003 41023123 -
Gso Gso19g1350 Chr19 42236753 42241504 -
Gso Gso3g1351 Chr3 39429567 39434140 -
Lapu Lapu6g00345 Chr6 3355932 3361291 -
Lasa Lasa3g03101 Chr3 619585875 619588144 -
Lele Lele05g1409 Chr05 8904940 8907587 +
Lele Lele06g1267 Chr06 8077077 8081266 +
Lele Lele07g1469 Chr07 8966091 8969161 +
Lele Lele08g1260 Chr08 8021812 8024952 +
Lja Lja1g1054 Chr1 10524388 10529172 +
Mal Mal3g3817 Chr3 115916090 115919827 -
Mepo Mepo3g03098 Chr3 41138601 41141734 -
Mesa Mesa25g00971 Chr25 11219593 11222206 +
Mibi Mibi02g1630 Chr02 16488319 16491320 +
Mtr Mtr7g2876 Chr7 45551725 45554871 -
Phac Phac1g02266 Chr1 32374418 32380031 -
Phco Phco2g01827 Chr2 48811325 48816313 -
Prci Prci1g2429 Chr1 44543043 44546385 -
Psa Psa3g1386 Chr3 124169297 124178440 +
Pste Pste5g01148 Chr5 7494436 7498878 -
Rops Rops8g03077 Chr8 68423180 68427329 -
Seca Seca2g04349 Chr2 128318740 128323374 -
Spst Spst1g03123 Chr1 39800401 39806540 +
Ssu Ssu4g1252 Chr4 20104929 20109439 +
Sto Sto8g0684 Chr8 4252165 4253151 -
Tpr Tpr6g3475 Chr6 37504664 37510003 +
Trre Trre13g03951 Chr13 47732568 47737093 -
Tsu Tsu07g03658 Chr07 42816721 42821328 -
Vian Vian2g02183 Chr2 41762862 41763827 -
Vifa Vifa5g02653 Chr5 883723422 883725754 -
Vimu Vimu6g02746 Chr6 24000292 24007845 +
Viun Viun1g02077 Chr1 32148078 32151032 -
Vivi Vivi6g03886 Chr6 134800931 134803634 +
Vra Vra3g0167 Chr3 1929844 1933687 -
Pvu Pvu1g1646 Chr1 41773583 41774791 +
Adu Adu06g01189 Chr06 15853445 15854068 +
Aed Aed4g0196 Chr4 1443392 1444042 -
Ahy Ahy16g0136 Chr16 1388758 1389375 -
Ahy Ahy6g1195 Chr6 17582813 17583875 +
Aip Aip06g00131 Chr06 1272332 1272949 -
Apr Apr4g0007 Chr4 98466 99095 +
Cca Cca03g02185 Chr03 42556921 42558209 +
Dod Dod01g2508 Chr01 64161706 64162380 +
Gma Gma19g01536 Chr19 44711098 44713069 +
Gma Gma03g01480 Chr03 41033470 41034586 +
Gso Gso19g1351 Chr19 42245537 42246729 +
Gso Gso3g1352 Chr3 39444539 39445752 +
Lapu Lapu6g00346 Chr6 3369088 3369720 +
Lja Lja1g1053 Chr1 10521254 10521922 -
Phco Phco2g01828 Chr2 48825057 48825689 +
Pste Pste5g01152 Chr5 7513790 7514422 +
Pumo Pumo5g02832 Chr5 75523466 75524089 +
Rops Rops8g03078 Chr8 68437443 68438051 +
Seca Seca8g05681 Chr8 148551432 148552745 -
Spst Spst1g03122 Chr1 39777390 39778010 -
Ssu Ssu4g1251 Chr4 20083773 20084408 -
Vimu Vimu6g02745 Chr6 23976400 23977032 -
Viun Viun1g02078 Chr1 32155070 32156611 +
Vra Vra3g0168 Chr3 1940721 1941802 +
Pvu Pvu1g1647 Chr1 41789351 41790573 +
Aed Aed4g0195 Chr4 1433598 1434346 -
Apr Apr4g0008 Chr4 108789 109340 +
Bach Bach8g00605 Chr8 3959234 3960204 +
Bva Bva04g02804 Chr04 24151650 24152189 -
Cca Cca03g02186 Chr03 42579415 42579936 +
Dod Dod01g2509 Chr01 64177104 64178199 +
Gma Gma19g01537 Chr19 44722502 44723026 +
Gma Gma03g01481 Chr03 41052299 41052835 +
Gso Gso19g1352 Chr19 42255377 42256577 +
Gso Gso3g1353 Chr3 39459127 39460364 +
Lapu Lapu6g00347 Chr6 3379054 3379904 +
Lasa Lasa6g02386 Chr6 476069098 476069658 -
Lja Lja1g1052 Chr1 10511778 10512414 -
Phco Phco2g01829 Chr2 48842811 48843299 +
Pste Pste5g01164 Chr5 7555841 7556359 +
Pumo Pumo5g02833 Chr5 75537792 75538720 +
Seca Seca8g05680 Chr8 148525913 148526470 -
Spst Spst1g03121 Chr1 39766090 39766617 -
Ssu Ssu4g1250 Chr4 20051769 20052305 -
Vian Vian2g02184 Chr2 41781365 41781874 +
Vimu Vimu6g02744 Chr6 23968057 23968563 -
Viun Viun1g02079 Chr1 32167502 32168189 +
Vra Vra3g0169 Chr3 1948290 1948796 +
Pvu Pvu1g1648 Chr1 41803050 41808973 -
Adu Adu06g01191 Chr06 15868371 15871038 -
Aed Aed4g0194 Chr4 1423447 1426970 +
Aev Aev06g0071 Chr06 597192 600351 -
Ahy Ahy16g0134 Chr16 1372841 1376106 +
Ahy Ahy6g1197 Chr6 17603362 17606589 -
Aip Aip06g00129 Chr06 1257026 1260275 +
Amo Amo06g0740 Chr06 10497484 10500768 -
Apr Apr4g0009 Chr4 113629 116808 -
Arst Arst6g01578 Chr6 15902126 15905015 -
Bach Bach8g00606 Chr8 3963263 3966247 -
Bva Bva04g02803 Chr04 24146084 24149451 +
Cca Cca03g02187 Chr03 42593390 42597316 -
Dod Dod01g2510 Chr01 64179933 64184954 -
Gma Gma03g01482 Chr03 41062686 41066231 -
Gso Gso3g1354 Chr3 39468381 39472071 -
Lapu Lapu6g00348 Chr6 3387658 3392588 -
Lasa Lasa6g02385 Chr6 475990827 475993247 +
Lja Lja1g1051 Chr1 10507011 10509650 +
Phco Phco2g01830 Chr2 48859387 48863199 -
Pumo Pumo5g02834 Chr5 75550130 75553712 -
Seca Seca8g05679 Chr8 148516999 148520207 +
Spst Spst1g03120 Chr1 39750750 39754425 +
Ssu Ssu4g1249 Chr4 20037132 20040130 +
Viun Viun1g02080 Chr1 32177589 32181332 -
Pvu Pvu1g1649 Chr1 41815034 41818258 +
Acco Acco02g1781 Chr02 13916057 13918907 -
Accr Accr2g01971 Chr2 54260981 54263760 +
Aed Aed4g0193 Chr4 1420702 1423211 -
Aev Aev06g0073 Chr06 602227 606125 +
Alju Alju01g1782 Chr01 14437970 14440703 -
Apr Apr4g0010 Chr4 117884 121080 +
Bach Bach8g00607 Chr8 3968484 3970801 +
Bisa Bisa03g0578 Chr03 7398513 7401214 +
Bva Bva04g02802 Chr04 24142558 24145151 -
Cca Cca03g02188 Chr03 42602078 42603677 +
Dere Dere01g3153 Chr01 46136137 46140333 -
Dod Dod01g2511 Chr01 64186398 64189383 +
Enph Enph2g1337 Chr2 11485370 11504154 -
Glsi Glsi02g3075 Chr02 79341461 79345891 -
Gma Gma03g01483 Chr03 41066785 41070931 +
Gso Gso3g1355 Chr3 39472549 39476774 +
Lasa Lasa3g03104 Chr3 619717712 619719704 +
Lele Lele05g1404 Chr05 8882404 8885392 -
Lele Lele06g1264 Chr06 8060734 8064464 -
Lele Lele07g1465 Chr07 8921373 8940479 -
Lele Lele08g1256 Chr08 8000560 8004974 -
Mal Mal3g3820 Chr3 115978021 115981659 +
Mepo Mepo3g03103 Chr3 41150636 41154688 +
Mesa Mesa25g00968 Chr25 11208513 11211676 -
Mibi Mibi02g1626 Chr02 16459939 16462537 -
Mtr Mtr7g2878 Chr7 45581640 45585582 +
Phac Phac1g02272 Chr1 32467250 32470548 +
Phco Phco2g01831 Chr2 48867388 48870295 +
Prci Prci1g2433 Chr1 44570656 44573725 +
Psa Psa3g1385 Chr3 124090526 124093013 -
Pste Pste5g01170 Chr5 7583069 7587052 +
Pumo Pumo5g02835 Chr5 75555508 75559031 +
Rops Rops8g03080 Chr8 68509001 68512129 +
Seca Seca2g04353 Chr2 128382444 128387165 +
Spst Spst1g03119 Chr1 39745993 39749164 -
Ssu Ssu4g1248 Chr4 20032558 20035604 -
Sto Sto8g0686 Chr8 4262775 4275269 +
Tpr Tpr6g3474 Chr6 37497144 37501211 -
Trre Trre13g03953 Chr13 47749065 47752247 +
Tsu Tsu07g03659 Chr07 42839594 42843277 +
Vian Vian2g02185 Chr2 41799064 41802901 +
Vifa Vifa5g02654 Chr5 883965632 883968498 +
Vimu Vimu6g02743 Chr6 23948101 23950861 -
Viun Viun1g02082 Chr1 32185971 32195680 +
Vra Vra3g0170 Chr3 1957602 1962073 +
Pvu Pvu1g1650 Chr1 41818538 41820328 +
Aed Aed4g0192 Chr4 1418715 1420514 -
Apr Apr4g0012 Chr4 123204 123827 +
Cca Cca03g02189 Chr03 42605164 42606960 +
Dod Dod01g2512 Chr01 64189699 64191629 +
Gma Gma03g01484 Chr03 41071194 41072993 +
Gso Gso3g1356 Chr3 39477122 39478921 +
Lal Lal1g1896 Chr1 21215809 21217455 -
Lan Lan9g0505 Chr9 7850459 7852162 -
Pumo Pumo5g02837 Chr5 75560134 75561051 +
Lasa Lasa6g02385 Chr6 475990827 475993247 +
Lasa Lasa6g02386 Chr6 476069098 476069658 -