Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2512 ATGCTTTTGCCAAATGGGAGGTTGATTCATTGCTTGGCCATGAAATCTGGGTTGGAAGGGGGCCTCTTTATTGTGTCTGCACTTCTGGAGATGCATGCTGAATTGGGTTCTCTGAACGATGCCCACAAGCTGTTTGAACGTTATTCCTACAGAAGCTCGCGTTTGTGGGGTTTTCTGATAAAAGGGTACTCGAAGTTTTCTCAAGAATCCAAAGTTTTTGAATTGTTCTCTAACATGAACAATTGTTTTGGTTTCCAACGGGATGCTTTCACAATGGAAGGTTTGGTTCGTGCCTTCGCAAAAGTTTTGGCCGGGAGAGAAGGGAAAGCATGTCATGGGGTGTGTATAAGGAATAACCTTTTGGTGAATGTTTGTTTGCAGACAACGGTTATAGATATGTACATGAAATGTGGGTTTGTTCATTATGCTTTGAGGTTGTTTGAAGATGCTAATGATAAGGATGTGGTTATATGGGGTGCTGTAATCAATGGATGTGCCAAAAGGGGGAGATTTTTAGAAGCTATGTCCCTTTGCAAGAGGATGCTGGAAAACTCAGTTGCCCCGAACCCGGTGACACTGGCCGGCTTTATTCTAGCTTGCTCTGGTTTGGGGTCTCTGAAGCAAGGAAAGAGCGTGCAAGGCTTTGTGATTAGAAACAAGGTTGACTTGGATGTGGTGAACTATACTTCTCTTGTGGACATGTATGCTAAATGCGGCTGTGTCAAAACTGCTCTCAGAATCTTCTCTATGATGCCGGCTAAAAATGTGGTCTCCTGGACTGCAATGATAAATGGATGTGCAGTGCATGGCCTGTGTATGGAAGCACTCGCCATCTTTGATCAAATGATGCAGAGTGCATGTGTTACATCAGAACATATGCCCAACTCGGTTACATTTATTTCGGCTCTCTCGGCTTGTTGTCACTCTGGAATGGTTCAAGAGGGGTGGAGGATCTTTAATTCTATGAAAGACTATACCATTTCTCCAAATGAGGAACACTATGCCTGCATGATAGAGGTTATAGCTAGGGCTGGCCAATTGGATGCAGCGTTGTCCTTCATATCAGACATGCCCATAAAACCAGGTCCTGATGTGTGGGGAGCTCTGTTAAGCGCATGCAGAATTCATAAACGAGTTGAACTGGCTGAAGAAATCGCAAAAATGCTTTCACTAATTGAGCCTGGTGATTCATCCTTGCATGTTTCGCTGTCCAGCACGTGTGCCAGTGAAAGGATGTGGGAAATAGGAGAGAGTACATTGACGAGAATGACTGAAGAGGGGTTTAATAAGACTCTTGGCTTTTCATCAATTGAAGTCAATAACAAGTTATGTGTATTTAGTTCTGATGATACACAGATCAGTCATATATGGAATTCTCTCAGTAGAGAAATGAGAGATAGTCCTTTATTATGA 1413 0.431 MLLPNGRLIHCLAMKSGLEGGLFIVSALLEMHAELGSLNDAHKLFERYSYRSSRLWGFLIKGYSKFSQESKVFELFSNMNNCFGFQRDAFTMEGLVRAFAKVLAGREGKACHGVCIRNNLLVNVCLQTTVIDMYMKCGFVHYALRLFEDANDKDVVIWGAVINGCAKRGRFLEAMSLCKRMLENSVAPNPVTLAGFILACSGLGSLKQGKSVQGFVIRNKVDLDVVNYTSLVDMYAKCGCVKTALRIFSMMPAKNVVSWTAMINGCAVHGLCMEALAIFDQMMQSACVTSEHMPNSVTFISALSACCHSGMVQEGWRIFNSMKDYTISPNEEHYACMIEVIARAGQLDAALSFISDMPIKPGPDVWGALLSACRIHKRVELAEEIAKMLSLIEPGDSSLHVSLSSTCASERMWEIGESTLTRMTEEGFNKTLGFSSIEVNNKLCVFSSDDTQISHIWNSLSREMRDSPLL* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2512 470 Gene3D Tetratricopeptide repeat domain 211 283 IPR011990 GO:0005515
Dod01g2512 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Dod01g2512 470 Gene3D Tetratricopeptide repeat domain 114 210 IPR011990 GO:0005515
Dod01g2512 470 Gene3D Tetratricopeptide repeat domain 7 106 IPR011990 GO:0005515
Dod01g2512 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 188 IPR002885 -
Dod01g2512 470 PANTHER - 123 460 - -
Dod01g2512 470 Pfam PPR repeat family 153 195 IPR002885 -
Dod01g2512 470 PANTHER - 18 204 - -
Dod01g2512 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 254 IPR002885 -
Dod01g2512 470 PANTHER - 18 204 - -
Dod01g2512 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Dod01g2512 470 Pfam Pentacotripeptide-repeat region of PRORP 261 358 IPR033443 -
Dod01g2512 470 Gene3D Tetratricopeptide repeat domain 284 441 IPR011990 GO:0005515
Dod01g2512 470 PANTHER - 123 460 - -
Dod01g2512 470 TIGRFAM PPR: pentatricopeptide repeat domain 257 288 IPR002885 -
Dod01g2512 470 TIGRFAM PPR: pentatricopeptide repeat domain 297 331 IPR002885 -
Dod01g2512 470 TIGRFAM PPR: pentatricopeptide repeat domain 156 189 IPR002885 -
Dod01g2512 470 TIGRFAM PPR: pentatricopeptide repeat domain 228 257 IPR002885 -
Dod01g2512 470 Pfam PPR repeat 128 149 IPR002885 -
Dod01g2512 470 Pfam PPR repeat 56 79 IPR002885 -
Dod01g2512 470 Pfam PPR repeat 227 255 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2512 Dod-Chr1 64189699 64191629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2512 6 462 Glycoside Hydrolase AT3G49170 32.258 9.06e-77 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2512 - - gmx:100775787 681.789