Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02653 ATGAATTCCGACGCTGATTCCGTTGCTAACCCTCCACCATCACCATCACCACCGCCGTCATCAATCCTCATCCCCGGCCTCCCAAACGAAGTTTCCAGAACCATCCTCTCCATGGTACCTTACGCTCACCACGCTCGTCTCAAATCAACTTCCAAATCATGGAAATCCGCACTTTCATCAAAATCATTTCTCAACACACTCTTAGGTCAAAACCGTAACAATCTCATCTGTATCTTTCCTCAAGATCCTTCAATCGCGTCGCCGTATCTCTTCGACGCTAACGCCGTCGCTTGGTGTCCTCTTCCTCCTATGCCGTGTAACCCTCACGTTTACGGTTTGTGTAACTTCGCCGCCGTTCCGTTTGGTTCTCATATTTACATCATCGGCGGGTCGCTTTTTGATACTCGCTCTTTTCCGATCAACCGTCCGTCGTCGTCTTCCGCGACTTTCCGTTTCAATTTCCGTGATTTCTCGTGGGAGGATCGCGCTCCGATGATTTCGCCTCGCGGAAGTTTCGCGTATGCTGTGGTTCCTTCCTCCGGTGAGATTATTGTCGCCGGAGGTGGATCGCGGCATACGGTTTTTGCTGCGGCGGGATCTCGGATTCGGGCGGTGGAGCGGTATGATGTTGTGGAGGATCAGTGGGAGGAATTGGATCCTCTTCCGTGTTTTCGGGCTGGGTGTGTTGGGTTTATGGAGAGGGAGAGGGAGGAGTTTTGGGTTGTTGGTGGTTATAGTGCTTCGAGGACTGTTTCGGGGGTTTTTCCGGTGGATGAGTATTGTAGAGATGCGGCGGTGATGGGTTTGGAGGACGGTGCGTGGCGGGAGGTTGGTGAGACATGGGGGGATGGAGAGGATGTTAGGGCTGGGAAAATTGTTGTTGGTGATGATAGTGGCTCTCCTTTGGTGTTCATGCTTGATGGGAATGAGATTTTCAGATATGAGACGTCTTCAAATCGTTGGGAATACGAGTCTCGTGTGCCAAAAAAAGCTCCCCTTGGCTCGGCCTTTGGCGTTGTAGTAGCATCTGGCGAGCTGTATGTATTGTCGCATTTGTATGATGATGATTTTGCAGAAACTCGAAGGTCCAGGCCCTATAAGAAAACAGGAACCATGTGCTTTCAAATCTATAATCCGAAAAAGAAGACATGGAGAACAGTGGTCACAAAATCGCCTTTCACTCGCCATATAGATATTACTAGTGCGGTATTGAGCTCAATTCGTCTGTGA 1230 0.4992 MNSDADSVANPPPSPSPPPSSILIPGLPNEVSRTILSMVPYAHHARLKSTSKSWKSALSSKSFLNTLLGQNRNNLICIFPQDPSIASPYLFDANAVAWCPLPPMPCNPHVYGLCNFAAVPFGSHIYIIGGSLFDTRSFPINRPSSSSATFRFNFRDFSWEDRAPMISPRGSFAYAVVPSSGEIIVAGGGSRHTVFAAAGSRIRAVERYDVVEDQWEELDPLPCFRAGCVGFMEREREEFWVVGGYSASRTVSGVFPVDEYCRDAAVMGLEDGAWREVGETWGDGEDVRAGKIVVGDDSGSPLVFMLDGNEIFRYETSSNRWEYESRVPKKAPLGSAFGVVVASGELYVLSHLYDDDFAETRRSRPYKKTGTMCFQIYNPKKKTWRTVVTKSPFTRHIDITSAVLSSIRL 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02653 409 Pfam Kelch motif 175 222 IPR006652 GO:0005515
Vifa5g02653 409 Pfam Kelch motif 113 165 IPR006652 GO:0005515
Vifa5g02653 409 SUPERFAMILY Kelch motif 79 388 IPR015915 GO:0005515
Vifa5g02653 409 ProSiteProfiles F-box domain profile. 21 67 IPR001810 GO:0005515
Vifa5g02653 409 Pfam F-box domain 26 63 IPR001810 GO:0005515
Vifa5g02653 409 MobiDBLite consensus disorder prediction 1 22 - -
Vifa5g02653 409 PANTHER F-BOX/KELCH-REPEAT PROTEIN OR23 18 409 - -
Vifa5g02653 409 SUPERFAMILY F-box domain 16 108 IPR036047 GO:0005515
Vifa5g02653 409 Gene3D - 59 403 IPR015915 GO:0005515
Vifa5g02653 409 SMART kelc_smart 182 233 IPR006652 GO:0005515
Vifa5g02653 409 SMART kelc_smart 124 179 IPR006652 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02653 13 221 EF-hand Containing Proteins AT4G39560 29.911 1.67e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02653 - - cam:101509705 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02653 5 883723422 883725754 Vifa5g02653 5 883723422 883725754 ECH