Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02654 ATGTCTTTAGATTCGCTAAACGACGTCGCTTCGTGCCCCCCAGAGATTGAAAAGTTCCTGTGTGACTTGCTCTTGGACTCCACTCAACCCATCTCCGAACGCTTCAGAGCCCTCTTCTCTCTTCGCAACCTCAAAGCAACTAGAGATTCATCCAATTTGTTGGCACATGAAGCTGCGTTTGCATTAGGTCAAATGCAAGAACTGGAAGCCATCCCTGCATTGACCTCAGTTCTTAATGATCTTTCTTTGCATCCCATTGTTCGCCACGAGGCGGCTGAAGCACTTGGTGCTATTGGTTCAGATAGTAATGTTTCTCTGTTGAAGCGTAGCTTGGAGTCTGATCCGGCTCAAGAGGTTCGAGAGACGTGTGAATTGGCTCTTCAACGTATTCTGAATTTAAAAGATGCTGCTACTACGGATGATTCGACTGCACCTGGTGTTTCTCCGTTTAAGTCTGTTGATCCTGCAGCACCGGCCACGTCTTGTTCTTCGGTTAATCAATTAAGGGAGTTACTTCTTGATGAGGAAAAAGGGATGTATGAGCGATATGCAGCTCTTTTTGCACTTCGAAATGACGGGGGAAACAAAGCTGTTGCTGCTATTATTGATTCCTTAGGTTCCAAGAGTGCTTTACTGAAACATGAGGTTGCATACGTTTTGGGCCAATTGCAAGACAAAGCTGCTTCAGCTGCTCTATCCAATATACTTAGAGATGTAAATGAGCACCCAATGGTGAGACACGAGGCTGCTGAAGCTCTTGGTTCAATTGCAGATGACCAAAGTGTAGCCCTTCTTGAGGAGTTTACGGCAGACCCAGAAGCTCTTGTCTCACAAAGTTGTCAAGTTGCTCTAAGCATGCTAGAAGCTGAAAGATCAGGGAAGTCTTTTGAGTTTCTGTTCATGCGCACTCCAACTGTACAGTAA 924 0.4556 MSLDSLNDVASCPPEIEKFLCDLLLDSTQPISERFRALFSLRNLKATRDSSNLLAHEAAFALGQMQELEAIPALTSVLNDLSLHPIVRHEAAEALGAIGSDSNVSLLKRSLESDPAQEVRETCELALQRILNLKDAATTDDSTAPGVSPFKSVDPAAPATSCSSVNQLRELLLDEEKGMYERYAALFALRNDGGNKAVAAIIDSLGSKSALLKHEVAYVLGQLQDKAASAALSNILRDVNEHPMVRHEAAEALGSIADDQSVALLEEFTADPEALVSQSCQVALSMLEAERSGKSFEFLFMRTPTVQ 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02654 307 FunFam Deoxyhypusine hydroxylase 156 297 - -
Vifa5g02654 307 Hamap Deoxyhypusine hydroxylase [DOHH]. 13 297 IPR027517 GO:0008612|GO:0019135
Vifa5g02654 307 Pfam HEAT repeats 44 127 - -
Vifa5g02654 307 Pfam PBS lyase HEAT-like repeat 245 268 IPR004155 -
Vifa5g02654 307 PANTHER PBS LYASE HEAT-LIKE PROTEIN 27 292 - -
Vifa5g02654 307 Gene3D - 151 299 IPR011989 -
Vifa5g02654 307 Gene3D - 4 144 IPR011989 -
Vifa5g02654 307 SMART E-Z type HEAT repeats 85 114 IPR004155 -
Vifa5g02654 307 SMART E-Z type HEAT repeats 243 272 IPR004155 -
Vifa5g02654 307 SMART E-Z type HEAT repeats 179 208 IPR004155 -
Vifa5g02654 307 SMART E-Z type HEAT repeats 210 239 IPR004155 -
Vifa5g02654 307 SMART E-Z type HEAT repeats 52 81 IPR004155 -
Vifa5g02654 307 SUPERFAMILY ARM repeat 53 287 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02654 Vifa-Chr5 883965632 883968498 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02654 K06072 - gmx:100815364 487.648