Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03123 ATGAGTTCCGATTGTGATGGTGGCGTCACCGTAATCCCGGGTCTTCCAAACGACGTCGCGGCGTGGATCCTCTCCAAGGTTCCCTACTCACACCACGCCAGACTGAAAACCACGTGCAAATCATGGAAACTGCTTTTATCTTCGAAATCGTTCTTAAACTCTTTGAATAAGAGGAACCACCTTCTGTGCATCTTCCCGCAGGACCCGTCGATTGCGTCGCCGTTCCTCTTCGATCCGAACGCGCTCGCCTGGTGCCCGCTACCTCCCATGCCCTGCAATCCTCACGTGTACGGCCTCTGCAACTTCGCCGCGGTGCCTCTCGGGCCCCACCTCTACGTCCTCGGGGGTTCTCTCTTCGACACGCGCTCCTTCCCAATCGACCGTCCCTCACCCTCCTCCGCCACCTTCCGCTTCAACCTCCACGACTTCTCCTGGGAGCCACGCGCCCCCATGCTCACGCCCCGAGGAAGCTTCGCCTGTGCGGTCGTCCAAGGGGCCATTCTCGTCGCCGGCGGGGGATCGCGGCATACGATGTTTGGGGCTGCTGGGACCAGGATTCGGTCGGTTGAGCGGTACGAAGTGGGGAGGGACCAGTGGGTGGCGATGGATCCACTGCCTGGGTTTCGCGCCGGTTGTGTGGGGTTTGTCGGCGGGGAGGGGAGGGAGTTCTGGGTGGTTGGAGGGTACGGCGCGTCGCGAACCATATCCGGGGTTTTTCCGGTGGATGAGTATTACAGGGATGCGGTGGTGATGGGAGTCGAGGGTGGCGCGTGGCGGGAAGTTGGGGATTTGTGGGGCGATGGGGAGAGAGTGAGGGTTGGGAAGATTGTGGTGGTGAATGATAATGGACGTCCCACGCTTTTCATGCTTGATGGGAACGAGATTTTTAGATATGACATGTCTTCCAATCGTTGGCTATATGAGTCTCGTGTGCCAAGAAAAGCTCCTTACAATTCGTCATTTGGTTTTGTAGTATTAGACGGGGAGCTGTATGTAGTGACACATTTATGTGTGGTTGATTTTACTGAAACGCGAAGGTCCAGGCAGCAAAAGAGGGCAGGAACTATGTTCATCCAAATCTATGACCCAAAAAATAAGACATGGAGATCTCTAGTTGCAAAATCACCTTTCAATTATCCAATAGATATTAATAGTGCTGTATTGAGCTCAATTTGTCTATGA 1182 0.5474 MSSDCDGGVTVIPGLPNDVAAWILSKVPYSHHARLKTTCKSWKLLLSSKSFLNSLNKRNHLLCIFPQDPSIASPFLFDPNALAWCPLPPMPCNPHVYGLCNFAAVPLGPHLYVLGGSLFDTRSFPIDRPSPSSATFRFNLHDFSWEPRAPMLTPRGSFACAVVQGAILVAGGGSRHTMFGAAGTRIRSVERYEVGRDQWVAMDPLPGFRAGCVGFVGGEGREFWVVGGYGASRTISGVFPVDEYYRDAVVMGVEGGAWREVGDLWGDGERVRVGKIVVVNDNGRPTLFMLDGNEIFRYDMSSNRWLYESRVPRKAPYNSSFGFVVLDGELYVVTHLCVVDFTETRRSRQQKRAGTMFIQIYDPKNKTWRSLVAKSPFNYPIDINSAVLSSICL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03123 393 Pfam Kelch motif 154 206 IPR006652 GO:0005515
Spst1g03123 393 SUPERFAMILY F-box domain 9 68 IPR036047 GO:0005515
Spst1g03123 393 SUPERFAMILY Kelch motif 66 371 IPR015915 GO:0005515
Spst1g03123 393 Gene3D - 67 379 IPR015915 GO:0005515
Spst1g03123 393 SMART kelc_smart 166 218 IPR006652 GO:0005515
Spst1g03123 393 SMART kelc_smart 110 165 IPR006652 GO:0005515
Spst1g03123 393 PANTHER F-BOX/KELCH-REPEAT PROTEIN OR23 8 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03123 Spst-Chr1 39800401 39806540 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03123 - - gmx:100820159 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03123 1 39800401 39806540 Spst1g03123 1 39800401 39806540 ECH