Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1051 ATGAATTCTAGACGAGACATCCGTAACAATAAAGTTGCGCTGTTTGATGGTATTGAGGAGGGTGGCATCAGGGAATCAGCTCTTTACCCCTCTTCCCATGAAATTGATGAACACGACAATGAGCAAGCAATGGATGGATTGCATGATAGAGTCAATCTGATGAAAAGATTGTCTCGTGATATTCAAGAGGAGGTGGATGGCCATAACCGCATGCTGGATCGTATGGGGAACGATATGGATTCATCAAGAGGAGTCCTCTCAGGCACTATGGACAAATTTAAAATGGTATTCGAGAAAAAATCCAGCCAGAGAATGTTTACGCTTGTAGCATCCTTTGTTGTGCTTTTTCTCATAATATACTACCTAACTAGGTAA 375 0.416 MNSRRDIRNNKVALFDGIEEGGIRESALYPSSHEIDEHDNEQAMDGLHDRVNLMKRLSRDIQEEVDGHNRMLDRMGNDMDSSRGVLSGTMDKFKMVFEKKSSQRMFTLVASFVVLFLIIYYLTR* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1051 124 SMART tSNARE_6 29 96 IPR000727 -
Lja1g1051 124 PANTHER GOLGI SNARE BET1-RELATED 1 124 IPR039897 GO:0015031|GO:0030173
Lja1g1051 124 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 34 96 IPR000727 -
Lja1g1051 124 CDD SNARE_Bet1 37 94 IPR039899 -
Lja1g1051 124 SUPERFAMILY SNARE fusion complex 31 96 - -
Lja1g1051 124 Gene3D - 42 105 - -
Lja1g1051 124 PANTHER BET1-LIKE SNARE 1-1 1 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1051 Lja-Chr1 10507011 10509650 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1051 K08504 - gmx:100814836 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1051 1 10507011 10509650 Lja1g1051 1 10507011 10509650 ECH
Lja1g1051 1 10507011 10509650 Lja6g0073 6 1314773 1319476 PCT