Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0505 ATGTGTACTTCACAAAACCCTTCTAAAACCCTTCTCTCCCTTTTCTCTTCTACCAACTTTCTCTCTTTGACAAAGCAACTTCACTCTCACCTCATCATCAATGGCCTCCACAAAGAGCTTTTCTATGGCTCCCACTTAACCAATACCTATATCAAATTGGGTTCTCTTCCACTTGCTTCAAAAGCCTTTAATCACATCACCACAAAGAATCTTCATTCATGGAACACCATTATCTCTGGTTACTCAAAACATGGTTTCTATAGTTATGTTTTGAAGCTTTTTAACAAGATGAGAAGTGAGGGAAATGGAATTGATAGCTTCAATTTGGTTTATGCTACCAAAGCTTGTCAAAGATTGAAACTTTTGCCAAATGGGGTGTTGATTCATTGCTTAGCTATTAAATCTGGGTTTGAAGGAGATTTGTTTGTAGTGCCTGTGATTTTGGAGATGTATGCTTTGTTGGATTCTTTGAGTGATGCGCGCAAGGTGTTTGATCAATATTCTTGCAGAAGTTCGGTTTTGTGGGGGTTTATGATAAAAGGGTATTTGAAGTTTTCTCAAGAATCAGAAGTTTTTGGGTTGTTCTATGACATGACTAGTTGTTTTGGTTTTCGATGGGATTCTTTCACAATGGAAGGTTTGGTTCGAGCCTGTGCAAATGTTTCGGCTGGTAGAGAAGGGAAAGCATCTCATGGGGTGTGTGTAAAGAACAATCTTTTGGTGAATTTTTGTTTGCTGACATCCGTTATAGATATGTATATGAAATGTGGGATTATTCATTATGCGATGAGGTTGTTCGAAGAAGCTAGTGATAGTAAGGATGTGGTTTTATGGAGTGCCGTGATCAACGGATGTGCTAAAACGGGGAGATTTTTGGAAGCTATGTCAGTGTTCAAAAGGATGATGGAAAACTCGATTATGCCAAATCCGGTGACGTTCAGCAGTGTAATTCTAGCTTGCTCTGGTGTAGGGTCTTTGATGAAAGGAAAGAGCGTGCACGGCTTTGTGATCAGAAACATGGTTGAGTTGGATGTGGTTAATTACACTTCTCTTTTAGATATGTATGCCAAATGCGGGCGCGTCGAAACTGCTTACAGAATCTTTCGTACGATGCCAACGAAAAACGTTGTCTCTTGGACTGCAATGATAAATGGATATGCAATGAATGGCTTATATTCGGACGCTATTTCTATCTTCGATCAAATGACACAGAAGAGTACTTGTGTTATATCGGAAAAACATACGCCTAACTCGATAACATTTGTTTCAGCTCTATCAGCATGTCGCCATCGTGGAATGGTTCAAGAAGGGTGGAGGATCTTTAAGTCTATGAAAGATTATGCTATTTCTCCGACCGAGGAACACTATGCTTGCATGGTAGATGTTTTAACTCGAGCCGGCCAGTATAATGCAGCATTGTCTTTTATATCAGATATGCCAATGCCGATAAAACCGGGTCGAAATGTGTGGGAAGCTCTGTTAAGTGCATGTAGAGTCCATGAACGAGTTGAATTTGATGAAGAAATCACAAAGATGAGAATGACAGAAGAAGGGTTTAATAAGAGTCTTGGCTTTGCTTCAATTGAAGTCAAGAACAAGTTATATGTATTTGGTTCTGCTTATACTCTTGCTTTCAAAAACACAGAAACTAGTCATATATGGAATTCTCTCAGTAAAGAAATGAGAGAAAGTGCCTTGTTATGA 1704 0.3914 MCTSQNPSKTLLSLFSSTNFLSLTKQLHSHLIINGLHKELFYGSHLTNTYIKLGSLPLASKAFNHITTKNLHSWNTIISGYSKHGFYSYVLKLFNKMRSEGNGIDSFNLVYATKACQRLKLLPNGVLIHCLAIKSGFEGDLFVVPVILEMYALLDSLSDARKVFDQYSCRSSVLWGFMIKGYLKFSQESEVFGLFYDMTSCFGFRWDSFTMEGLVRACANVSAGREGKASHGVCVKNNLLVNFCLLTSVIDMYMKCGIIHYAMRLFEEASDSKDVVLWSAVINGCAKTGRFLEAMSVFKRMMENSIMPNPVTFSSVILACSGVGSLMKGKSVHGFVIRNMVELDVVNYTSLLDMYAKCGRVETAYRIFRTMPTKNVVSWTAMINGYAMNGLYSDAISIFDQMTQKSTCVISEKHTPNSITFVSALSACRHRGMVQEGWRIFKSMKDYAISPTEEHYACMVDVLTRAGQYNAALSFISDMPMPIKPGRNVWEALLSACRVHERVEFDEEITKMRMTEEGFNKSLGFASIEVKNKLYVFGSAYTLAFKNTETSHIWNSLSKEMRESALL* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0505 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 70 104 IPR002885 -
Lan9g0505 567 PANTHER - 141 324 - -
Lan9g0505 567 PANTHER - 272 510 - -
Lan9g0505 567 PANTHER - 34 182 - -
Lan9g0505 567 TIGRFAM PPR: pentatricopeptide repeat domain 420 452 IPR002885 -
Lan9g0505 567 TIGRFAM PPR: pentatricopeptide repeat domain 276 309 IPR002885 -
Lan9g0505 567 TIGRFAM PPR: pentatricopeptide repeat domain 377 409 IPR002885 -
Lan9g0505 567 TIGRFAM PPR: pentatricopeptide repeat domain 72 102 IPR002885 -
Lan9g0505 567 TIGRFAM PPR: pentatricopeptide repeat domain 348 376 IPR002885 -
Lan9g0505 567 Pfam PPR repeat family 273 320 IPR002885 -
Lan9g0505 567 Pfam PPR repeat family 374 428 IPR002885 -
Lan9g0505 567 Gene3D Tetratricopeptide repeat domain 329 408 IPR011990 GO:0005515
Lan9g0505 567 PANTHER - 141 324 - -
Lan9g0505 567 PANTHER - 34 182 - -
Lan9g0505 567 PANTHER - 272 510 - -
Lan9g0505 567 Gene3D Tetratricopeptide repeat domain 409 534 IPR011990 GO:0005515
Lan9g0505 567 Gene3D Tetratricopeptide repeat domain 82 228 IPR011990 GO:0005515
Lan9g0505 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Lan9g0505 567 Gene3D Tetratricopeptide repeat domain 229 328 IPR011990 GO:0005515
Lan9g0505 567 Pfam PPR repeat 173 200 IPR002885 -
Lan9g0505 567 Pfam PPR repeat 73 101 IPR002885 -
Lan9g0505 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Lan9g0505 567 Pfam PPR repeat 340 371 IPR002885 -
Lan9g0505 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0505 Lan-Chr9 7850459 7852162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0505 16 563 Glycoside Hydrolase AT3G49170 31.293 5.83e-78 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0505 - - gmx:100775787 796.193