Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso3g1356 | ATGCGTAGTGCTCCCACCATTTCATCACAAAACCCTTTAGAAACCCTTCGTGCCTTTTTCTCTTGTGCCAAGATTCTCTCTTCAGCGCAGCAACTTCACGCTCAGGTCATCATCAACGGGCTTCACAAGAAGGTTTTCTATGGTTCCAACATCACCAATGTTTATATCCAATCGGGTTCTCTTCCTCTGGCCAAAAAGGCTTTTGATCAAATTTCCGTTAAGAACCTTCATTCTTGGAACACCATTATTTCGGGTTACTCAAAACGCAGTCTCTACGGTGATGTTTTGCAGCTTTTTCGACGATTGCGAAGTGAAGGCAATGCAGTGGATGGCTTCAACTTGGTGTTTTCCGTTAAAGCGAGTCAAAGGTTGCTGCTTTTGCATAATGGGAGGTTGCTTCATTGCTTGGCCATCAAATCTGGGTTGGAGGGAGACCTGTTCTTCGCGCCTGCGATTTTGGATATGTATGCTGAGTTGGGTTCTCTGGACGATGCCCGCAAGCTGTTTGAACGATATTCTTACAGAAGCTCGGTTATGTGGGGCTTTATGATAAAGGGGTATTTGAATTTTTCTTTAGAATCCAAAGTTTTTGAGCTATTCTCGTGCATGACTAATTATTTTGGTTTCAAATGGGATGCTTTCACAATGGAAGGTCTAGTTCGAGCCTGTGCAAACCTTTTGGCTGGGAGAGAGGGGAAAGCATCTCATGGGGTGTGTATAAAGAACAATCTTCTGGTGAATGTCTGTTTGCTGACATCTGTTATAGATATGTATATGAAATGTGGAGTTACTCATTATGCATTTAGGTTGTTTGAAAAAGCGAATGATCTTAAGGATGTGGTTCTATGGAGTGCTGTGATTAATGGGTGTGCCAAGAAAGGGAAATTTTGTGAAGCTTTGTCCGTGTTCAGAAGGATGCTGGAAAACTCTATTACCCCAAATCCGGTGACATTGGCTGGCGTAATTCTAGCTTGCTCTGGGGTGGGGTCTTTGAAACAAGGAAAAAGTGTGCACGGCTTTGTGGTTAGAAACATGGTTCAATTGGATGTGGTAAATTATACTTCTCTTGTGGACATGTATTCTAAATGCGGGTGTGTCAAAACTGCTTACAGAATCTTCTGTATGATGCCGGCCAAAAATGTAGTCTCTTGGACTGCAATGATAAATGGATTTGCAATGCATGGCTTGTATTTTAAAGCTCTTTCCATTTTTTATCAAATGACACAGAATTCATGTGTTATATCAGGAAAACACGTGCCCAACTCGATTACATTTACTTCAGTTCTATCTGCTTGTAGTCACTCTGGAATGGTTCAGGAGGGGTTGAGGATCTTTAATTCTATGAAAGATTATGGCATTTCTCCAACTGAGGAACACTGTGCCTACATGATAGGTGTTTTAGCTAGAGTTGGTCAATTTGATGCAGCATTATCCTTTCTCTCAAACATGCCTATAAAACCTGGTCCTAATGTTTTGGGAGTTCTATTAAGTGCATGTAGATTCCATAAACGAGTTGAACTTGCTGAAGAAATAGCGAAAACACTTTCATCTTTAGAGCATAATGATTTATCCTGGCATGCTTCATTGTCGAACATATATTCTGATGGTAGGATGTGGGGAGTAGTAGAGATGGCAATGGCTGAAGAAGGGTTGAATAAGAGTCTTGGCTTTTCCTCAATTGAAGTCAGGAATAAGTTGTGTCTATTTAGTTCAAATGATACACTTGCGTTCACAAGCACAAATATCAGTCATACTTGGAATTCTCTCAGTAGGGAAATGAGAGAAATTGCTTTGTTATAA | 1800 | 0.4078 | MRSAPTISSQNPLETLRAFFSCAKILSSAQQLHAQVIINGLHKKVFYGSNITNVYIQSGSLPLAKKAFDQISVKNLHSWNTIISGYSKRSLYGDVLQLFRRLRSEGNAVDGFNLVFSVKASQRLLLLHNGRLLHCLAIKSGLEGDLFFAPAILDMYAELGSLDDARKLFERYSYRSSVMWGFMIKGYLNFSLESKVFELFSCMTNYFGFKWDAFTMEGLVRACANLLAGREGKASHGVCIKNNLLVNVCLLTSVIDMYMKCGVTHYAFRLFEKANDLKDVVLWSAVINGCAKKGKFCEALSVFRRMLENSITPNPVTLAGVILACSGVGSLKQGKSVHGFVVRNMVQLDVVNYTSLVDMYSKCGCVKTAYRIFCMMPAKNVVSWTAMINGFAMHGLYFKALSIFYQMTQNSCVISGKHVPNSITFTSVLSACSHSGMVQEGLRIFNSMKDYGISPTEEHCAYMIGVLARVGQFDAALSFLSNMPIKPGPNVLGVLLSACRFHKRVELAEEIAKTLSSLEHNDLSWHASLSNIYSDGRMWGVVEMAMAEEGLNKSLGFSSIEVRNKLCLFSSNDTLAFTSTNISHTWNSLSREMREIALL* | 600 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso3g1356 | 599 | Gene3D | Tetratricopeptide repeat domain | 334 | 416 | IPR011990 | GO:0005515 | |
| Gso3g1356 | 599 | Gene3D | Tetratricopeptide repeat domain | 125 | 231 | IPR011990 | GO:0005515 | |
| Gso3g1356 | 599 | Gene3D | Tetratricopeptide repeat domain | 232 | 333 | IPR011990 | GO:0005515 | |
| Gso3g1356 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 380 | 414 | IPR002885 | - | |
| Gso3g1356 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 279 | 313 | IPR002885 | - | |
| Gso3g1356 | 599 | Pfam | PPR repeat family | 278 | 324 | IPR002885 | - | |
| Gso3g1356 | 599 | PANTHER | - | 19 | 558 | - | - | |
| Gso3g1356 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 421 | 455 | IPR002885 | - | |
| Gso3g1356 | 599 | TIGRFAM | PPR: pentatricopeptide repeat domain | 382 | 414 | IPR002885 | - | |
| Gso3g1356 | 599 | TIGRFAM | PPR: pentatricopeptide repeat domain | 353 | 382 | IPR002885 | - | |
| Gso3g1356 | 599 | TIGRFAM | PPR: pentatricopeptide repeat domain | 423 | 457 | IPR002885 | - | |
| Gso3g1356 | 599 | TIGRFAM | PPR: pentatricopeptide repeat domain | 281 | 314 | IPR002885 | - | |
| Gso3g1356 | 599 | TIGRFAM | PPR: pentatricopeptide repeat domain | 77 | 108 | IPR002885 | - | |
| Gso3g1356 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 75 | 109 | IPR002885 | - | |
| Gso3g1356 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 349 | 379 | IPR002885 | - | |
| Gso3g1356 | 599 | Pfam | PPR repeat | 423 | 453 | IPR002885 | - | |
| Gso3g1356 | 599 | Pfam | PPR repeat | 352 | 380 | IPR002885 | - | |
| Gso3g1356 | 599 | Pfam | PPR repeat | 382 | 412 | IPR002885 | - | |
| Gso3g1356 | 599 | Pfam | PPR repeat | 78 | 106 | IPR002885 | - | |
| Gso3g1356 | 599 | Pfam | PPR repeat | 178 | 204 | IPR002885 | - | |
| Gso3g1356 | 599 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 19 | 558 | - | - | |
| Gso3g1356 | 599 | Gene3D | Tetratricopeptide repeat domain | 13 | 123 | IPR011990 | GO:0005515 | |
| Gso3g1356 | 599 | Gene3D | Tetratricopeptide repeat domain | 417 | 566 | IPR011990 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso3g1356 | Gso-Chr3 | 39477122 | 39478921 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso3g1356 | 45 | 596 | Glycoside Hydrolase | AT3G49170 | 32.977 | 2.00e-82 | 274 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso3g1356 | - | - | gmx:100775787 | 1192.95 |