Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03659 ATGCCGCCTGCAGATTCACTGAACGACGTCGCTTCGTGCTCCTCTGAGATGGAAAAGTTCCTGTGTGACTTGCTGTTGGACTCAACCCAACCCATCTCTGAACGATTCAGAGCCCTCTTCTCTCTTCGCAACCTCAAAGGTCCCGCTCCTCGCTCCGCCCTAATTCAAGCAACGAGAGATTCATCGAATTTGTTAGCACATGAAGCTGCATTTGCATTAGGTCAAATGCAAGAACAGGAAGCCATTCCTGCATTGACCTCAGTTCTTAATGATCTTTCTTTGCATCCCATTGTTCGCCACGAGGCAGCTGAAGCACTTGGTGCTATTGGTTCGGATAGTAATGTTTCTTTGTTGAAACATAGTTTGAATTCTGATCCGGCTCAAGAGGTTCGTGAAACGTGTGAATTGGCTCTTCAACGTATTCTGAATTTAAAACATGATGCTACTAATGATGATTTGGTTGCACCTGGTATTTCTCCGTTTAAGTCTGTTGATCCTGCAGCACCGGCCACATCTGGTTCTTCAGTTAATCAGCTAAGggAGTTACTTCTTGACGAGGAAAAAGGGATGTATGAGCGCTATGCAGCTCTTTTTGCACTTCGAAATGATGGTGGAAATGAAGCTGTTGCTGCTATTATTGATTCCTTGGGTTCCAAGAGCGCTTTACTGAAACACGAGGTTGCATATGTATTGGGACAATTGCAAGACAAAGCTGCTTCAGCTGCTCTATCCAATATACTTAGAGATGTGAATGAGCATCCAATGGTTAGGCACGAGGCTGCTGAAGCTCTTGGTTCAATTGCAGATAACCAAAGTGTAGCCCTTCTTGAGGAGTTTACAGCAGATCCAGAGCCTCTTGTCTCACAAAGTTGTCAAGTTGCTCTAAGCATGCTAGAATTTGAAAGATCAGGGAAATCATTTGAGTTCCTGTTCATGCGCACTCCAATTGTACATTAA 957 0.442 MPPADSLNDVASCSSEMEKFLCDLLLDSTQPISERFRALFSLRNLKGPAPRSALIQATRDSSNLLAHEAAFALGQMQEQEAIPALTSVLNDLSLHPIVRHEAAEALGAIGSDSNVSLLKHSLNSDPAQEVRETCELALQRILNLKHDATNDDLVAPGISPFKSVDPAAPATSGSSVNQLRELLLDEEKGMYERYAALFALRNDGGNEAVAAIIDSLGSKSALLKHEVAYVLGQLQDKAASAALSNILRDVNEHPMVRHEAAEALGSIADNQSVALLEEFTADPEPLVSQSCQVALSMLEFERSGKSFEFLFMRTPIVH 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03659 318 Pfam PBS lyase HEAT-like repeat 256 279 IPR004155 -
Tsu07g03659 318 Pfam HEAT repeats 53 138 - -
Tsu07g03659 318 PANTHER PBS LYASE HEAT-LIKE PROTEIN 219 303 - -
Tsu07g03659 318 PANTHER PBS LYASE HEAT-LIKE PROTEIN 23 242 - -
Tsu07g03659 318 SMART E-Z type HEAT repeats 221 250 IPR004155 -
Tsu07g03659 318 SMART E-Z type HEAT repeats 32 61 IPR004155 -
Tsu07g03659 318 SMART E-Z type HEAT repeats 254 283 IPR004155 -
Tsu07g03659 318 SMART E-Z type HEAT repeats 63 92 IPR004155 -
Tsu07g03659 318 SMART E-Z type HEAT repeats 190 219 IPR004155 -
Tsu07g03659 318 SMART E-Z type HEAT repeats 96 125 IPR004155 -
Tsu07g03659 318 PANTHER DEOXYHYPUSINE HYDROXYLASE 219 303 - -
Tsu07g03659 318 PANTHER DEOXYHYPUSINE HYDROXYLASE 23 242 - -
Tsu07g03659 318 Gene3D - 9 152 IPR011989 -
Tsu07g03659 318 Gene3D - 162 307 IPR011989 -
Tsu07g03659 318 Hamap Deoxyhypusine hydroxylase [DOHH]. 14 308 IPR027517 GO:0008612|GO:0019135
Tsu07g03659 318 SUPERFAMILY ARM repeat 96 297 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03659 Tsu-Chr7 42839594 42843277 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03659 K06072 - gmx:100815364 511.916