Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1248 ATGGTTATGGATTCGCCTAACGACGTCGCTTCGGTTTCCCCGGACATGGAAAAGTTCCTGTGTGAATTATTGCTGGATTCCTCCCAGCAAATTTCTGAGCGCTTCAGAGCACTCTTCTCTCTCCGCAACCTCAAAGGCCCCGCCCCGCGCAACGCCCTTATTCTCGCCACTAGGGATTCGTCGAACTTGTTGGCACACGAAGCTGCATTTGCATTGGGTCAAATGCAGGAATTGGAAGCCATCCCTGCTTTGGCTTCAGTTCTGAATGATCTTTCTTTGCATCCCATTGTTCGCCACGAGGCAGCTGAGGCACTGGGTGCTATTGGTTCAGCCGGTAATGTTCCTCTCCTGAAGAGTAGTTTGGATTCAGATCCGGCTCAGGAGGTTCGAGAAACGTGTGAGTTGGCTCTTCAACGAATTCAGCATTTAAAAGATGCTGGTAATACTGATGAATTGGCTGCAACTGAAGTGTCTCCTTTTAAGTCTGTTGATCCAGCTGCGCCAGTGACCTCTGGTTCTTCTGTTGATCAACTAAGGCAAGTACTTCTTGATGAAGAAAAAGGGATGTATGAACGTTATGCAGCTCTTTTCGCACTTCGGAATGATGGTGGAAATGAAGCTGTTGCTGCTATTATTGATTCCTTGGGCTCAAAAAGTGCTCTACTGCGCCATGAGGTTGCATATGTTTTGGGTCAATTGCAAGACAAAGCTGCTTCAGCTGCTTTATCCAATATACTTAAAGATGTGAATGAGCACGCAATGGTTAGACATGAGGCTGCTGAAGCTCTTGGTTCAATTGCAGATGACCAAAGTGTAGCCCTTCTTGAGGAGTTTACGGCTGATCCAGAGCCTCTTGTCTCACAAAGTTGTCAAGTTGCTCTAAGCATGCTTGAATTTGAACGATCAGGGGAAATCATTCGAGTTCCTGTTCATGCGCACTCCAACTGTGCATTAAATTTTTTCTCGTGGTTATGCCAAGACATGAAGAATGAGCTGATGCATGAGAATGAAGAGGCAGATAAACAGAGTGACATACAAAGAAATAGAGAGCAACTGTTggatttcttacttattttacaATTGATGAAATTAAGAAACATTAGCATCATATGTACACGAATTGAACTAtggttttgttaa 1140 0.4377 MVMDSPNDVASVSPDMEKFLCELLLDSSQQISERFRALFSLRNLKGPAPRNALILATRDSSNLLAHEAAFALGQMQELEAIPALASVLNDLSLHPIVRHEAAEALGAIGSAGNVPLLKSSLDSDPAQEVRETCELALQRIQHLKDAGNTDELAATEVSPFKSVDPAAPVTSGSSVDQLRQVLLDEEKGMYERYAALFALRNDGGNEAVAAIIDSLGSKSALLRHEVAYVLGQLQDKAASAALSNILKDVNEHAMVRHEAAEALGSIADDQSVALLEEFTADPEPLVSQSCQVALSMLEFERSGEIIRVPVHAHSNCALNFFSWLCQDMKNELMHENEEADKQSDIQRNREQLLDFLLILQLMKLRNISIICTRIELWFC 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1248 379 Gene3D - 165 311 IPR011989 -
Ssu4g1248 379 PANTHER DEOXYHYPUSINE HYDROXYLASE 22 303 - -
Ssu4g1248 379 SUPERFAMILY ARM repeat 63 296 IPR016024 -
Ssu4g1248 379 Coils Coil 329 349 - -
Ssu4g1248 379 PANTHER PBS LYASE HEAT-LIKE PROTEIN 22 303 - -
Ssu4g1248 379 SMART E-Z type HEAT repeats 189 218 IPR004155 -
Ssu4g1248 379 SMART E-Z type HEAT repeats 95 124 IPR004155 -
Ssu4g1248 379 SMART E-Z type HEAT repeats 62 91 IPR004155 -
Ssu4g1248 379 SMART E-Z type HEAT repeats 220 249 IPR004155 -
Ssu4g1248 379 SMART E-Z type HEAT repeats 31 60 IPR004155 -
Ssu4g1248 379 SMART E-Z type HEAT repeats 253 282 IPR004155 -
Ssu4g1248 379 Coils Coil 126 146 - -
Ssu4g1248 379 Pfam PBS lyase HEAT-like repeat 222 248 IPR004155 -
Ssu4g1248 379 Pfam PBS lyase HEAT-like repeat 255 278 IPR004155 -
Ssu4g1248 379 Hamap Deoxyhypusine hydroxylase [DOHH]. 17 307 IPR027517 GO:0008612|GO:0019135
Ssu4g1248 379 Pfam HEAT repeats 53 137 - -
Ssu4g1248 379 Gene3D - 10 158 IPR011989 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1248 K06072 - gmx:100815364 514.227