Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1896 AATGCCAATCAAGCTGCCCATGCCAAGCCATGGCTAAGTCATTACCGAGAAACTGCCAAGCCATGGCCAAGTCGTGACCGAGCATATGCTGGACCTAAGCCAAGTCATGGCCAAGTCGTGATCGAGAATCTGCCAAGCTATGGCCAAGTCGCGACCGAGGTTTTCTATGGTTCCCACTTAACCAATACCTATGTCAATTTGGATTCTCTTCCACTTGCCTCAAAATCCTTTTATCACATCACCACAAACAACCTTCATTCATGGAACACCATTATCTCCGGTTACTCAAAACATGCTTTCTACAGTTATGTTTTGCAGCTTTTCAACAAGATGGGGAGTGATGGCAATGCAATTGATAGCTTCAACTTGGTGTATGCTACCAAAGCTTGTCAAAGATTGAAACTTTTTCCAAATGGGTTGTTGCTTCATTGCTTAGCCATCAAATCTGGGTTTGAAGGAGACTTGTTTGTAGTGCCTATGCTTTTGGAGATGTATGCCTTCCTGGGTTCTCTAAGTGATGCACACAAGCTATTTGATCAATATTCTTACACAAGTTTGGTTTTGTGGGGTTTTATGATAAAAGGGTATTTGAAGTTTTCTCAAGAATCCAAAGTTTTTGGGTTGTTCTCTAACATGGCTAGTTGTTTTGGTTTTCAATGGGATACTTTCACAATGGAAGGTTTGGTTTGTGCCTGTGGGAATTATTGGAGCTTAGTCAACAAAGACAACCAAGTACTTTGCCCAATAAGAAATCTAATGGTTCCCAAGTTAGCCTCAAAGCCAGCCATGATCCAGCAACAATCCATGGCCAAGACGCACTAG 822 0.4221 NANQAAHAKPWLSHYRETAKPWPSRDRAYAGPKPSHGQVVIENLPSYGQVATEVFYGSHLTNTYVNLDSLPLASKSFYHITTNNLHSWNTIISGYSKHAFYSYVLQLFNKMGSDGNAIDSFNLVYATKACQRLKLFPNGLLLHCLAIKSGFEGDLFVVPMLLEMYAFLGSLSDAHKLFDQYSYTSLVLWGFMIKGYLKFSQESKVFGLFSNMASCFGFQWDTFTMEGLVCACGNYWSLVNKDNQVLCPIRNLMVPKLASKPAMIQQQSMAKTH 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1896 273 Gene3D Tetratricopeptide repeat domain 35 271 IPR011990 GO:0005515
Lal1g1896 273 PANTHER - 51 234 - -
Lal1g1896 273 Pfam PPR repeat 187 213 IPR002885 -
Lal1g1896 273 Pfam PPR repeat 87 115 IPR002885 -
Lal1g1896 273 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 118 IPR002885 -
Lal1g1896 273 TIGRFAM PPR: pentatricopeptide repeat domain 86 117 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1896 Lal-Chr1 21215809 21217455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1896 83 238 Glycoside Hydrolase AT3G49170 22.785 1.90e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1896 - - gmx:100775787 258.455