Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1350 ATGAATTCCTATTGGGACACCGGCGCCGGCGGTGGCGGTGGCGCGACGCTCATCCCGGGTCTCCCAAACGACGTCGCGGCGTCGATCCTCTCGATGGTCCCCTACTCCCACCACGGGAGGCTCAAAGCCACATGCAAATCATGGAAACTGCTTCTCTCCTCGAAATTTTTCTTAGCCTCGCTGAACGGAAAGAACCACCTTCTCTGCATCTTCCCGCAAGATCCTTCAATCGCTTCACCCTTTCTGTTTGATCCGAACGCGCTCGCGTGGTGCCCGCTCCCTCTCATGCCCTGCAACCCCCACGTGTACGGCCTCTGCAACTTCGCCGCCGTCTCCCTCGGGTCCCACCTCTACGTCCTCGGTGGGTCCCTCTTCGACACGCGCTCCTTCCCCATCGATCGCCCCTCGCCGTCCTCCGCCACGTTCCGCTTCAGCTTCCACGACTTTTCGTGGGAGCCACGCGCCCAGATGCTGTCTCCGAGGGGGAGCTTCGCCTGCGCGGTGGTGCCGGCCCGCGGGAGCATTTATGTGGCCGGTGGGGGCTCGAGGCATACGATGTTCGGGGCGGCGGGGTCGAGGATTCGGTCGGTGGAGCGGTACGAGGTGGGGAGGGACCGGTGGGTGCCGATGGAGAATCTCCCCGGGTTTCGTGCCGGGTGCGTGGGGTTTGTCGGAGAGGAGGGGAGGGAGTTCTGGGTGATGGGAGGGTATGGCGCGTCGAGGACCATATCGGGGGTGTTTCCGGTGGATGAGTATTATAGGGATGCGGTAGTGATGGGAGTGGAGAGTGGCGCTTGGAGAGAGGTTGGGGATATGTGGGGGAATGAGGAGAGGGTCAGGGTTGGGAAGATTGTGGTGGTTGAATATAATGGATGTCCCATGCTTTTCATGCTTGATGGAAATGAGATTTTGAGATATGACATGTCTTCAAATCGTTGGCTATACGAGTCTCGTGTGCCAAGAAAAGCTCCTTACTATTCGTCATTTGGGGTTGTTGTGTTAGACAGGGAGCTGTATGTAGTGACACATTTATGTGTTGTTGATTTTACTGAAACACGGAGGTCCAGACAACATAAGAGGGCAGGAACTCTGTTCATTCAAATCTACGACCCAAAAAACAAGACATGGAGATCGCTTGTTGCCAAATCACCTTTCAATTACCCTATAGATATTAATAGTGCTGTATTGAGCTCAATTTGTCTATGA 1206 0.5589 MNSYWDTGAGGGGGATLIPGLPNDVAASILSMVPYSHHGRLKATCKSWKLLLSSKFFLASLNGKNHLLCIFPQDPSIASPFLFDPNALAWCPLPLMPCNPHVYGLCNFAAVSLGSHLYVLGGSLFDTRSFPIDRPSPSSATFRFSFHDFSWEPRAQMLSPRGSFACAVVPARGSIYVAGGGSRHTMFGAAGSRIRSVERYEVGRDRWVPMENLPGFRAGCVGFVGEEGREFWVMGGYGASRTISGVFPVDEYYRDAVVMGVESGAWREVGDMWGNEERVRVGKIVVVEYNGCPMLFMLDGNEILRYDMSSNRWLYESRVPRKAPYYSSFGVVVLDRELYVVTHLCVVDFTETRRSRQHKRAGTLFIQIYDPKNKTWRSLVAKSPFNYPIDINSAVLSSICL* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1350 401 PANTHER F-BOX/KELCH-REPEAT PROTEIN OR23 14 401 - -
Gso19g1350 401 Pfam F-box domain 20 54 IPR001810 GO:0005515
Gso19g1350 401 PANTHER F-BOX/KELCH-REPEAT PROTEIN OR23 14 401 - -
Gso19g1350 401 SMART kelc_smart 116 171 IPR006652 GO:0005515
Gso19g1350 401 SMART kelc_smart 174 227 IPR006652 GO:0005515
Gso19g1350 401 Gene3D - 64 388 IPR015915 GO:0005515
Gso19g1350 401 Pfam Kelch motif 166 214 IPR006652 GO:0005515
Gso19g1350 401 SUPERFAMILY F-box domain 14 71 IPR036047 GO:0005515
Gso19g1350 401 SUPERFAMILY Kelch motif 72 379 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1350 Gso-Chr19 42236753 42241504 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1350 - - gmx:100796892 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1350 19 42236753 42241504 Gso3g1351 3 39429567 39434140 GST