Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02834 ATGAATGCTAGACGAGACAACCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCATCTGTTTACTCCTCTTCTCATGAAATTGATGAACACGATAATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGATTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGATCGAATGGGGAATGATATGGATTCATCAAGAGGAGTCCTCTCGGGCACTATGGACAAATTTAAAATGGTATTCGAGACCAAATCCAGCCGGAGAATGTTTACGCTTGTAGCATCCTTTGTTGTGCTTTTTCTTATAATATACTACCTCACTAGGTCTCTCTTGTTGCCTCCCCATAATCTGCCACCGTCAGTAGAGCCCAAAGTGCCCAACTGA 432 0.4306 MNARRDNRNNRVSLFDGIEEGGIRASSVYSSSHEIDEHDNEQALDGLQDRVNLLKRLSGDINEEVDSHNRMLDRMGNDMDSSRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVLFLIIYYLTRSLLLPPHNLPPSVEPKVPN 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02834 143 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 34 96 IPR000727 -
Pumo5g02834 143 PANTHER GOLGI SNARE BET1-RELATED 8 124 - -
Pumo5g02834 143 Gene3D - 42 105 - -
Pumo5g02834 143 CDD SNARE_Bet1 37 94 IPR039899 -
Pumo5g02834 143 SMART tSNARE_6 29 96 IPR000727 -
Pumo5g02834 143 SUPERFAMILY SNARE fusion complex 30 96 - -
Pumo5g02834 143 FunFam bet1-like SNARE 1-1 41 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02834 Pumo-Chr5 75550130 75553712 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02834 K08504 - gmx:100814836 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02834 5 75550130 75553712 Pumo5g02834 5 75550130 75553712 ECH
Pumo5g02834 5 75550130 75553712 Pumo3g03597 3 75733610 75737700 PCT