Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03120 ATGAATGCTAGACGAGAGAACCGTAACAATAGAGTTTCCCTTTTTGATGGTATCGAGGAGGGTGGCATCCGAGCACAATCTGTTTATTCCTCCTCTCATGAAATTGATGAACACGATAATGAGCAGGCATTGGATGGATTGCAAGACAGGGTCAAACTGCTGAAAAGATTGTCGGGTGATATCAATGAGGAGGTGGATAGCCATAACCGTATGCTGGATCGAATGGGGAATGATATGGATGCATCAAGAGGAGTCCTTTCGGGCACTATGGACAAATTTAAAATGGTATTTGAGACCAAATCCAGCCGGAGAATGTTTACGCTTGTAGCATCCTTTGTCGTGCTTTTTCTTATAATATACTACCTCACTAAGTAA 375 0.424 MNARRENRNNRVSLFDGIEEGGIRAQSVYSSSHEIDEHDNEQALDGLQDRVKLLKRLSGDINEEVDSHNRMLDRMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVLFLIIYYLTK 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03120 124 SUPERFAMILY SNARE fusion complex 28 96 - -
Spst1g03120 124 FunFam bet1-like SNARE 1-1 41 105 - -
Spst1g03120 124 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 34 96 IPR000727 -
Spst1g03120 124 Gene3D - 42 105 - -
Spst1g03120 124 SMART tSNARE_6 29 96 IPR000727 -
Spst1g03120 124 CDD SNARE_Bet1 37 94 IPR039899 -
Spst1g03120 124 PANTHER GOLGI SNARE BET1-RELATED 8 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03120 Spst-Chr1 39750750 39754425 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03120 K08504 - gmx:100814836 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03120 1 39750750 39754425 Spst1g03120 1 39750750 39754425 ECH
Spst1g03120 1 39750750 39754425 Spst7g00108 7 817330 831643 PCT