Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1650 ATGAGTAGTGCACCCCTCATTTTATCAAGCAACCCTTTCAAAACCTTTAATGCCCTTTTATCCTGCCCTAAGTTCCTCTCTTTGGCTCAGCAACTTCACGCTCAGGTCATCATCAACGGGCTTTACAGGGAGGTTTTCTATGGTTCCAACATCACCAATGCTTATGTCCAATCGGGTTCTCTTCCACTTGCCACAAAAGCCTTTGATCAGATCACTGGAAAGAATCTTCACTCTTGGAACACCATCATCTCCGGTTACTCAAAAGGCTGTCTCTACGATTATGTTTTAAAGCTTTTCCGAGACTTACGAAGTGACGGCAATGCAGTTGATAGCTTCAACTTGGTGTTTGCCATTAAAGCAAGTCAGAGGTTGATGTTTTTTCATAATGGGAGATTGCTTCATTGCTTGGCCATCAAATATGGGTTGGAAGGAGACCTGTTTATCGTGCCAGCACTTTTGGAAATGTATGCTGAGTTGGGTTCTCTGAATGATGCCCACAAGCTGTTTGAACGATATTCTTACAGAAGCTCCGTTATGTGGGGTTTTATGATAAAGGGGTATTTGAAAGTTTCACAAGAACCCCGTGTTTTTGAGCTACTCTCTAATATGACTAACTATTTTGATTTCCAATGGGATGTTTTCACAATGGAAGGCTTAGTTCGAGCTTGTGCAAACGTCTTGGCTGAGAGAGAAGGGAAAGCATCTCATGCTGTATGTATAAAGAACAATCTTTTGGTGAATGTCTGCTTGCTGACATCTGTTATAGATATGTATATGAAATGTGGCTTTACTCATTATGCATTTAGGTTGTTTGAAAAAGCTAATGATCACAAGGATGTGGTTCTATGGAGCGCTTTAATCAATGGGTGTGCCAAAAAAGGGAAATTTTTTGAAGCTTTGTCCATGTTCAAAAGGATGCTGGAAAACTCAACTGCACCAAATCAGGTGACACTGTCTGGCGTGATTCTAGCTTGCTCTGGTGTGGGGTCTTTGAAACAAGGAAAAAGTGTGCACGGCTTTGTGATTAGAAACATGGTTGAATTGGATGTGGTGAATTATACCTCTCTTGTGGACATGTATTCTAAATGCGGGTGTGTCAAAACTGCTCACAGAATCTTCTGTATGATGCCGGTAAAAAGTGTTGTCTCTTGGACTGCAATGATAAATGGATACGCAATACATGGCTTGTATTTGGAAGCCCTTTCCACTTTTTATCAAATGACACAGAATGCGTGTGTTATATCAGGAAAGCATGTGCCCAACTCAGTTACATTTACTTCAGTTCTATCAGCTTGCAGTCACTCTGGAATGGTTCAGGAGGGGTTTCAGATCTTTAATTCTATGAAAGATTATGGCTTTTCTCCAACTGAGGAACACTGTGCCTGCATGGTAGGTATTTTCGCTAGAGCTGATCAATTTGATGCAGCATTATCCTTTCTATCAGACATGCCCATAAAACCTGGTCTTAATGCCTGGGGGACTTTGTTACGTGCATGTAGATTCCATAAACGTGTTGAACTTGCTGAAGAAATAGCAAACAAGCTTTCACTTTTAGAGCCTAAGAATGATTTCTCCTGGCAAGCTTCACTGGCAGACATGTATACTGACGGGATAGAAAAGATGATAATGGCTGAAGAGGGGCTTAATAAGAGTCTTGGCTTTTCCTCAATTGAAGTCAGGAATAAGTTATGTGTATTTAGTTCCAATGATACACTTGCATTCACAAGCCCAGATATCAGTCATACTTGGAATTCTCTCAGTAGAGAAATGAGAGAAAATGCCTTGTTATGA 1791 0.4076 MSSAPLILSSNPFKTFNALLSCPKFLSLAQQLHAQVIINGLYREVFYGSNITNAYVQSGSLPLATKAFDQITGKNLHSWNTIISGYSKGCLYDYVLKLFRDLRSDGNAVDSFNLVFAIKASQRLMFFHNGRLLHCLAIKYGLEGDLFIVPALLEMYAELGSLNDAHKLFERYSYRSSVMWGFMIKGYLKVSQEPRVFELLSNMTNYFDFQWDVFTMEGLVRACANVLAEREGKASHAVCIKNNLLVNVCLLTSVIDMYMKCGFTHYAFRLFEKANDHKDVVLWSALINGCAKKGKFFEALSMFKRMLENSTAPNQVTLSGVILACSGVGSLKQGKSVHGFVIRNMVELDVVNYTSLVDMYSKCGCVKTAHRIFCMMPVKSVVSWTAMINGYAIHGLYLEALSTFYQMTQNACVISGKHVPNSVTFTSVLSACSHSGMVQEGFQIFNSMKDYGFSPTEEHCACMVGIFARADQFDAALSFLSDMPIKPGLNAWGTLLRACRFHKRVELAEEIANKLSLLEPKNDFSWQASLADMYTDGIEKMIMAEEGLNKSLGFSSIEVRNKLCVFSSNDTLAFTSPDISHTWNSLSREMRENALL* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1650 596 Pfam PPR repeat 78 106 IPR002885 -
Pvu1g1650 596 Pfam PPR repeat 352 379 IPR002885 -
Pvu1g1650 596 Pfam PPR repeat 382 410 IPR002885 -
Pvu1g1650 596 Pfam PPR repeat 252 273 IPR002885 -
Pvu1g1650 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Pvu1g1650 596 PANTHER - 19 555 - -
Pvu1g1650 596 TIGRFAM PPR: pentatricopeptide repeat domain 382 413 IPR002885 -
Pvu1g1650 596 TIGRFAM PPR: pentatricopeptide repeat domain 353 380 IPR002885 -
Pvu1g1650 596 TIGRFAM PPR: pentatricopeptide repeat domain 423 457 IPR002885 -
Pvu1g1650 596 TIGRFAM PPR: pentatricopeptide repeat domain 281 314 IPR002885 -
Pvu1g1650 596 TIGRFAM PPR: pentatricopeptide repeat domain 77 110 IPR002885 -
Pvu1g1650 596 Gene3D Tetratricopeptide repeat domain 10 126 IPR011990 GO:0005515
Pvu1g1650 596 Gene3D Tetratricopeptide repeat domain 416 584 IPR011990 GO:0005515
Pvu1g1650 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Pvu1g1650 596 Gene3D Tetratricopeptide repeat domain 127 228 IPR011990 GO:0005515
Pvu1g1650 596 Gene3D Tetratricopeptide repeat domain 229 334 IPR011990 GO:0005515
Pvu1g1650 596 Gene3D Tetratricopeptide repeat domain 335 415 IPR011990 GO:0005515
Pvu1g1650 596 Pfam PPR repeat family 278 325 IPR002885 -
Pvu1g1650 596 Pfam PPR repeat family 420 457 IPR002885 -
Pvu1g1650 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Pvu1g1650 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Pvu1g1650 596 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 19 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1650 Pvu-Chr1 41818538 41820328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1650 44 592 Glycoside Hydrolase AT3G49170 30.605 1.20e-74 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1650 - - gmx:100775787 973.77