Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1252 ATGAAGTGCGACAGCGGTGATCCCTCGTGTAGCGCGACGCTGATCCCGGGCCTCCCAAACGACGTCGCGGCGTGGATCCTCTCGAAGGTCCCGTACTCCCACCACGGTCGGCTGAAAGTGACATGCAGATCATGGAGACTCCTCCTATCCTCGAAATCGTTCTTGGCGTCTCTCAACAACCGAAACCACCTTCTCTGCATCTTCCCGCAGGACCCTTCCATCGCATCCCCGTTCCTCTTCGACCCCCACGCGCTCGCGTGGTGCCCCCTCCCTCCCATGCCCTGCAACCCGCACGTGTACGGGCTCTGCAACTTCGCGGCCGTGCCGCTCGGCCCGCACCTCTACGTCCTCGGCGGGTCCCTCTTCGACACGCGCTCGTTCCCCATCGACCGCCCCTCCCCCTCCGCCTCCGCCTTCCGCTTCAACTTCCACGACTTCTCGTGGGAGCCACGCGCCCCCATGCTGTCCCCGCGGGGGAGCTTCGCCTGCGCGGCGGTTCCGTCGCGAGGGCACATTCTGGTGGCCGGCGGGGGGTCACGGCACACGATGTTTGGTGCCGCCGGGTCGAGGATTCGGTCGGTGGAGCGGTACGAGGTGGGGAGGGACCGGTGGGTGGCGATGGATCCTCTGCCCGGGTTTCGCGCCGGGTGCGTGGGGTTTGTAGGCAGGGAGGGGAGGGAGTTCTGGGTGATGGGAGGGTACGGCGCGTCGAGGACCATTTCGGGGGTGTTTCCGGTGGATGAGTATTACAGGGACGCGGTGGTGACGGGAGTGGAGGGTGGCGCGTGGCGGGAGGTTGGGGACATGTGGGGGGATGGGGAGAGGGTGAGGGTTGGGAAGATTGTGGTGGTTGATGAGAATGGTTGTCCCGCGCTTTTCATGCTTGATGGGAATGAGATTTTGAGATATGACATGTCTTCAAATCGTTGGCTATATGAGTCTCGTGTGCCAAGAAAAGCTCCTTACAATTCGTCATTTGGTTTTGTAGTGTTAGACGGGGAGCTGTATGTAGTGACACATTTATGTGTTGTGTATTTTACAGAAACGCGAAGGTCCAGGCACCAGAAGAGGCCAGGAACTCTGTTCATTCAAATCTATGACCCAAAAAAGAAGACATGGAGATCGCTAGTCGCGAAATCACCTTTCAATTACCCTATAGATATTAATAGTGCTGTATTGAGCTCAATTTGTCTGTGA 1197 0.5906 MKCDSGDPSCSATLIPGLPNDVAAWILSKVPYSHHGRLKVTCRSWRLLLSSKSFLASLNNRNHLLCIFPQDPSIASPFLFDPHALAWCPLPPMPCNPHVYGLCNFAAVPLGPHLYVLGGSLFDTRSFPIDRPSPSASAFRFNFHDFSWEPRAPMLSPRGSFACAAVPSRGHILVAGGGSRHTMFGAAGSRIRSVERYEVGRDRWVAMDPLPGFRAGCVGFVGREGREFWVMGGYGASRTISGVFPVDEYYRDAVVTGVEGGAWREVGDMWGDGERVRVGKIVVVDENGCPALFMLDGNEILRYDMSSNRWLYESRVPRKAPYNSSFGFVVLDGELYVVTHLCVVYFTETRRSRHQKRPGTLFIQIYDPKKKTWRSLVAKSPFNYPIDINSAVLSSICL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1252 398 SUPERFAMILY F-box domain 7 71 IPR036047 GO:0005515
Ssu4g1252 398 PANTHER F-BOX/KELCH-REPEAT PROTEIN OR23 12 398 - -
Ssu4g1252 398 Gene3D - 70 385 IPR015915 GO:0005515
Ssu4g1252 398 SMART kelc_smart 171 224 IPR006652 GO:0005515
Ssu4g1252 398 SMART kelc_smart 113 168 IPR006652 GO:0005515
Ssu4g1252 398 Pfam Kelch motif 102 154 IPR006652 GO:0005515
Ssu4g1252 398 PANTHER F-BOX/KELCH-REPEAT PROTEIN OR23 12 398 - -
Ssu4g1252 398 SUPERFAMILY Kelch motif 69 376 IPR015915 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1252 - - gmx:100820159 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1252 4 20104929 20109439 Ssu4g1252 4 20104929 20109439 ECH