Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02187 ATGCTAGACGAGACAACCGTAACAATAGAGTTTCCCTTTTTGATGGCATTGGATGGATTGCAAGATAGAGTCAGTCTGCTGAAAAGATTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGATCGAATGGGGAATGATATGGATTCATCAAGAGGAGTCCTTTCGGGCACCATGGACAAATTTAAAATGGTATTCGAGACCAAATCCAGCCGGAGAATGTTTACACTTGTAGCATCTTTTGTGGTGCTTTTTCTTATAATATACTACCTCACTAGGGCTAAAAGATGGCTGCTTACGTTGGACAGGGTGACATGA 330 0.4212 MLDETTVTIEFPFLMALDGLQDRVSLLKRLSGDINEEVDSHNRMLDRMGNDMDSSRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVLFLIIYYLTRAKRWLLTLDRVT 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02187 109 PANTHER GOLGI SNARE BET1-RELATED 16 97 IPR039897 GO:0015031|GO:0030173
Cca03g02187 109 CDD SNARE_Bet1 17 67 IPR039899 -
Cca03g02187 109 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 17 69 IPR000727 -
Cca03g02187 109 SUPERFAMILY SNARE fusion complex 16 69 - -
Cca03g02187 109 Gene3D - 15 78 - -
Cca03g02187 109 PANTHER - 16 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02187 Cca-Chr3 42593390 42597316 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02187 K08504 - gmx:100500028 158.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02187 03 42593390 42597316 Cca03g02187 03 42593390 42597316 ECH
Cca03g02187 03 42593390 42597316 Cca02g00102 02 1896752 1911889 PCT