Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01484 ATGCGTAGTGCTCCCACCATTTCATCACAAAACCCTTTAGAAACCCTTCGTGCCTTTTTCTCTTGTGCCAAGATTCTCTCTTCAGCGCAGCAACTTCACGCTCAGGTCATCATCAACGGGCTTCACAAGAAGGTTTTCTATGGTTCCAACATCACCAATGTTTATATCCAATCGGGTTCTCTTCCTCTGGCCAAAAAGGCTTTTGATCAAATTTCCGTTAAGAACCTTCATTCTTGGAACACCATTATTTCGGGTTACTCAAAACGCAGTCTCTACGGTGATGTTTTGCAGCTTTTTCGACGATTGCGAAGTGAAGGCAATGCAGTGGATGGCTTCAACTTGGTGTTTTCCGTTAAAGCGAGTCAAAGGTTGCTGCTTTTGCATAATGGGAGGTTGCTTCATTGCTTGGCCATCAAATCTGGGTTGGAGGGAGACCTGTTCTTCGCGCCTGCGATTTTGGATATGTATGCTGAGTTGGGTTCTCTGGACGATGCCCGCAAGCTGTTTGAACGATATTCTTACAGAAGCTCGGTTATGTGGGGCTTTATGATAAAGGGGTATTTGAATTTTTCTTTAGAATCCAAAGTTTTTGAGCTATTCTCGTGCATGACTAATTATTTTGGTTTCAAATGGGATGCTTTCACAATGGAAGGTCTAGTTCGAGCCTGTGCAAACCTTTTGGCTGGGAGAGAGGGGAAAGCATCTCATGGGGTGTGTATAAAGAACAATCTTCTGGTGAATGTCTGTTTGCTGACATCTGTTATAGATATGTATATGAAATGTGGAGTTACTCATTATGCATTTAGGTTGTTTGAAAAAGCGAATGATCTTAAGGATGTGGTTCTATGGAGTGCTGTGATTAATGGGTGTGCCAAGAAAGGGAAATTTTGTGAAGCTTTGTCCGTGTTCAGAAGGATGCTGGAAAACTCTATTACCCCAAATCCGGTGACATTGGCTGGCGTAATTCTAGCTTGCTCTGGGGTGGGGTCTTTGAAACAAGGAAAAAGTGTGCACGGCTTTGTGGTTAGAAACATGGTTCAATTGGATGTGGTAAATTATACTTCTCTTGTGGACATGTATTCTAAATGCGGGTGTGTCAAAACTGCTTACAGAATCTTCTGTATGATGCCGGCCAAAAATGTAGTCTCTTGGACTGCAATGATAAATGGATTTGCAATGCATGGCTTGTATTTTAAAGCTCTTTCCATTTTTTATCAAATGACACAGAATTCATGTGTTATATCAGGAAAACACGTGCCCAACTCGATTACATTTACTTCAGTTCTATCTGCTTGTAGTCACTCTGGAATGGTTCAGGAGGGGTTGAGGATCTTTAATTCTATGAAAGATTATGGCATTTCTCCAACTGAGGAACACTGTGCCTACATGATAGGTGTTTTAGCTAGAGTTGGTCAATTTGATGCAGCATTATCCTTTCTCTCAAACATGCCTATAAAACCTGGTCCTAATGTTTTGGGAGTTCTATTAAGTGCATGTAGATTCCATAAACGAGTTGAACTTGCTGAAGAAATAGCGAAAACACTTTCATCTTTAGAGCATAATGATTTATCCTGGCATGCTTCATTGTCGAACATATATTCTGATGGTAGGATGTGGGGAGTAGTAGAGATGGCAATGGCTGAAGAAGGGTTGAATAAGAGTCTTGGCTTTTCCTCAATTGAAGTCAGGAATAAGTTGTGTCTATTTAGTTCAAATGATACACTTGCGTTCACAAGCACAAATATCAGTCATACTTGGAATTCTCTCAGTAGGGAAATGAGAGAAATTGCTTTGTTATAA 1800 0.4078 MRSAPTISSQNPLETLRAFFSCAKILSSAQQLHAQVIINGLHKKVFYGSNITNVYIQSGSLPLAKKAFDQISVKNLHSWNTIISGYSKRSLYGDVLQLFRRLRSEGNAVDGFNLVFSVKASQRLLLLHNGRLLHCLAIKSGLEGDLFFAPAILDMYAELGSLDDARKLFERYSYRSSVMWGFMIKGYLNFSLESKVFELFSCMTNYFGFKWDAFTMEGLVRACANLLAGREGKASHGVCIKNNLLVNVCLLTSVIDMYMKCGVTHYAFRLFEKANDLKDVVLWSAVINGCAKKGKFCEALSVFRRMLENSITPNPVTLAGVILACSGVGSLKQGKSVHGFVVRNMVQLDVVNYTSLVDMYSKCGCVKTAYRIFCMMPAKNVVSWTAMINGFAMHGLYFKALSIFYQMTQNSCVISGKHVPNSITFTSVLSACSHSGMVQEGLRIFNSMKDYGISPTEEHCAYMIGVLARVGQFDAALSFLSNMPIKPGPNVLGVLLSACRFHKRVELAEEIAKTLSSLEHNDLSWHASLSNIYSDGRMWGVVEMAMAEEGLNKSLGFSSIEVRNKLCLFSSNDTLAFTSTNISHTWNSLSREMREIALL 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01484 599 Gene3D Tetratricopeptide repeat domain 334 416 IPR011990 GO:0005515
Gma03g01484 599 Gene3D Tetratricopeptide repeat domain 125 231 IPR011990 GO:0005515
Gma03g01484 599 Gene3D Tetratricopeptide repeat domain 232 333 IPR011990 GO:0005515
Gma03g01484 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Gma03g01484 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Gma03g01484 599 Pfam PPR repeat family 278 324 IPR002885 -
Gma03g01484 599 PANTHER - 19 558 - -
Gma03g01484 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Gma03g01484 599 TIGRFAM PPR: pentatricopeptide repeat domain 382 414 IPR002885 -
Gma03g01484 599 TIGRFAM PPR: pentatricopeptide repeat domain 353 382 IPR002885 -
Gma03g01484 599 TIGRFAM PPR: pentatricopeptide repeat domain 423 457 IPR002885 -
Gma03g01484 599 TIGRFAM PPR: pentatricopeptide repeat domain 281 314 IPR002885 -
Gma03g01484 599 TIGRFAM PPR: pentatricopeptide repeat domain 77 108 IPR002885 -
Gma03g01484 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Gma03g01484 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 379 IPR002885 -
Gma03g01484 599 Pfam PPR repeat 423 453 IPR002885 -
Gma03g01484 599 Pfam PPR repeat 352 380 IPR002885 -
Gma03g01484 599 Pfam PPR repeat 382 412 IPR002885 -
Gma03g01484 599 Pfam PPR repeat 78 106 IPR002885 -
Gma03g01484 599 Pfam PPR repeat 178 204 IPR002885 -
Gma03g01484 599 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 19 558 - -
Gma03g01484 599 Gene3D Tetratricopeptide repeat domain 13 123 IPR011990 GO:0005515
Gma03g01484 599 Gene3D Tetratricopeptide repeat domain 417 566 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01484 Gma-Chr3 41071194 41072993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01484 45 596 Glycoside Hydrolase AT3G49170 32.977 2.00e-82 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01484 - - gmx:100775787 1192.95