Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02080 ATGAATGCTAGAAGAGACCACCGTAACAATAGAGTTTCCCTTTTCGATGGTATCGAGGAGGGTGGCATCAGAGCACAATCTGTTTTCTCCTCTTCTCATGAAATTGATGAACATGACAATGAGCAGGCATTGGATGGACTGCAAGATAGAGTCAGTCTACTGAAAAGATTATCAGGTGATATCAACGAGGAAGTGGATAGCCATAACCGCATGCTGGATCGAATGGGGAATGATATGGATTCATCAAGAGGAGTCCTTTCGGGCACTATGGACAAGTTTAAAATGGTATTTGAGACCAAATCCAGCCGGAGAATGTTTACGCTTGTAGCATCCTTTGTTGTGCTTTTTCTTGTAATATACTATCTCACTAAGTAA 375 0.416 MNARRDHRNNRVSLFDGIEEGGIRAQSVFSSSHEIDEHDNEQALDGLQDRVSLLKRLSGDINEEVDSHNRMLDRMGNDMDSSRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVLFLVIYYLTK 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02080 124 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 34 96 IPR000727 -
Viun1g02080 124 SUPERFAMILY SNARE fusion complex 29 96 - -
Viun1g02080 124 CDD SNARE_Bet1 37 94 IPR039899 -
Viun1g02080 124 FunFam bet1-like SNARE 1-1 41 105 - -
Viun1g02080 124 PANTHER GOLGI SNARE BET1-RELATED 8 124 - -
Viun1g02080 124 Gene3D - 42 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02080 Viun-Chr1 32177589 32181332 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02080 K08504 - gmx:100814836 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02080 1 32177589 32181332 Viun1g02080 1 32177589 32181332 ECH
Viun1g02080 1 32177589 32181332 Viun7g00133 7 841713 846682 PCT