Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03953 ATGCCTGCGGATTCCTGCTCCTCTGAGATGGAAAAGTTCCTCTGCGATTTACTGTTGGACTCAACCCAACCCATCTCTGAACGCTTCAGAGCCCTCTTCTCTCTTCGTAACCTCAAAGGTCCCGCTCCTCGCACCGCCCTTATTCAAGCGACGAGAGATTCATCGAATTTGTTGGCACACGAAGCTGCGTTTGCATTAGGTCAAATGCAAGAACAAGAAGCCATTCCTGCATTGACCTCAGTTCTTAACGATCTTTCTTTGCATCCTATTGTTCGCCACGAGGCAGCTGAAGCACTTGGTGCTATTGGTTCCGATAGTAACGTTTCTTTGTTGAAACATAGTTTGAATTCTGATCCGGCTCAAGAGGTTCGAGAAACATGTGAATTGGCTCTTCAACGTATTCTGAATTTAAAACATGACGCTACTAATGATGATTTGACTGCACCTGATATATCTCCCTTTAAGTCTGTTGATCCTGCAGCACCGGCCACATCTTGTTCTTCAGTTAATCAACTAAGGGAATTACTTCTTGATGAGGATAAAGGAATGTATGAGCGCTATGCAGCTCTTTTTGCACTTCGAAATGATGGTGGAAATGAAGCTGTTGCTGCCATTATTGATTCCCTGGGTTCCAAGAGTGCTTTATTGAAACACGAGGTTGCATATGTTTTGGGCCAATTGCAAAACAAAGCTGCTTCAGCTGCTCTATCCAATATACTTAGAGATGTGAATGAGCACCCAATGGTTAGACACGAGGCTGCTGAAGCTCTTGGTTCAATTGCAGATAACCAAAGTGTAGCCCTTCTTGAGGAGTTTACAGCAGACCCAGAGCCTCTTGTCTCACAAAGTTGTCAAGTTGCCCTAAGCATGCTAGAATTTGAAAGATCAGGGAAATCATTTGAGTTCCTGTTCATGCGCACTCCAATTGTACATTAA 936 0.4402 MPADSCSSEMEKFLCDLLLDSTQPISERFRALFSLRNLKGPAPRTALIQATRDSSNLLAHEAAFALGQMQEQEAIPALTSVLNDLSLHPIVRHEAAEALGAIGSDSNVSLLKHSLNSDPAQEVRETCELALQRILNLKHDATNDDLTAPDISPFKSVDPAAPATSCSSVNQLRELLLDEDKGMYERYAALFALRNDGGNEAVAAIIDSLGSKSALLKHEVAYVLGQLQNKAASAALSNILRDVNEHPMVRHEAAEALGSIADNQSVALLEEFTADPEPLVSQSCQVALSMLEFERSGKSFEFLFMRTPIVH 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03953 311 FunFam Deoxyhypusine hydroxylase 3 152 - -
Trre13g03953 311 Hamap Deoxyhypusine hydroxylase [DOHH]. 7 301 IPR027517 GO:0008612|GO:0019135
Trre13g03953 311 PANTHER PBS LYASE HEAT-LIKE PROTEIN 21 296 - -
Trre13g03953 311 SMART E-Z type HEAT repeats 214 243 IPR004155 -
Trre13g03953 311 SMART E-Z type HEAT repeats 247 276 IPR004155 -
Trre13g03953 311 SMART E-Z type HEAT repeats 56 85 IPR004155 -
Trre13g03953 311 SMART E-Z type HEAT repeats 183 212 IPR004155 -
Trre13g03953 311 SMART E-Z type HEAT repeats 89 118 IPR004155 -
Trre13g03953 311 SMART E-Z type HEAT repeats 25 54 IPR004155 -
Trre13g03953 311 SUPERFAMILY ARM repeat 89 290 IPR016024 -
Trre13g03953 311 FunFam Deoxyhypusine hydroxylase 160 301 - -
Trre13g03953 311 Gene3D - 155 300 IPR011989 -
Trre13g03953 311 Gene3D - 4 146 IPR011989 -
Trre13g03953 311 Pfam HEAT repeats 46 131 - -
Trre13g03953 311 Pfam HEAT repeats 216 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03953 Trre-Chr13 47749065 47752247 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03953 K06072 - gmx:100815364 503.442