Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02837 ATGTATTCTAAATGCGGGTGTGTCAAAACTGCTTACAGAATCTTCCGTATGATGCCGGCAAAAAATGTAGTCTCTGAGACTGCAATGATAAATGGATTCTCAATGCATGCCTTGTATTCAGAAGCTCTTTCCATTTTTGATCAAATGACACAGAATGCATGTGTTTTATCAGGAAAGCACGTGCCCAACTCAGTTACATTTACTTCAGTTCTATCAGCTTGTAGTCACTCTGGAATGGTTCAGGAGGGGTTGAGGATCTTTACTTCTATGAAAGATTATGGCATTTCTCCAACTGAGGAACACTGTGCCTACATGATAGGTGTTTTAGCTAGAGCTGGTCAATTTGATGCAGCATTATCCTTTCTATCAAACATGCCTATAAAACCTGGTCTTAATGTTTTGGGAGCTCTGTTAAGTGCATGTAGATTATTCCATAAACGAGTTGAACTTGCTGAAGAAATAGCAAAAACGCTTTCACTTTTAGAGGCTAGTGATTTATCTTGGCATGCTTCACTGTGGAACATGTATGCTGATGGTAGGATGTGGGAAATAGGAGAGGTGCTAATGGCTGAAGAGGGGTTGAATAAGAGTCTCGGCTTTTCCTCAATAGAAGTCAAGAATAAGTTATGTGTATTTAGTTCAAATGATACATTTGTGTTCACAAGCACAGATATCAGTCATACTTGGAATTCTCTCAGTAGGGAAATGAGAGAAAATGCTTTGTTATGA 729 0.3882 MYSKCGCVKTAYRIFRMMPAKNVVSETAMINGFSMHALYSEALSIFDQMTQNACVLSGKHVPNSVTFTSVLSACSHSGMVQEGLRIFTSMKDYGISPTEEHCAYMIGVLARAGQFDAALSFLSNMPIKPGLNVLGALLSACRLFHKRVELAEEIAKTLSLLEASDLSWHASLWNMYADGRMWEIGEVLMAEEGLNKSLGFSSIEVKNKLCVFSSNDTFVFTSTDISHTWNSLSREMRENALL 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02837 242 Gene3D Tetratricopeptide repeat domain 1 217 IPR011990 GO:0005515
Pumo5g02837 242 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 238 IPR046960 GO:0003723|GO:0009451
Pumo5g02837 242 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 63 97 IPR002885 -
Pumo5g02837 242 Pfam PPR repeat 27 52 IPR002885 -
Pumo5g02837 242 Pfam PPR repeat 105 125 IPR002885 -
Pumo5g02837 242 Pfam PPR repeat 2 22 IPR002885 -
Pumo5g02837 242 Pfam PPR repeat 65 95 IPR002885 -
Pumo5g02837 242 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 1 221 - -
Pumo5g02837 242 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Pumo5g02837 242 NCBIfam pentatricopeptide repeat 65 99 IPR002885 -
Pumo5g02837 242 NCBIfam pentatricopeptide repeat 27 55 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02837 Pumo-Chr5 75560134 75561051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02837 1 217 Glycoside Hydrolase AT3G49170 38.914 1.20e-39 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02837 - - gmx:100775787 417.927