Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0192 ATGCGTAGTGTGCTTCTTATTTCATCACGAAACCCTCTCGAAACCCTTCGTGCCTTTTTCTCTCGCGCCAAGATTCTCTCTTCGGCGCAGCAACTTCACGCTCAGGTCATCATCAACGGGCTTCACAGGGAAGTTTTCTATGGTTCCAACATCACCCATTCTTATATCCAATCGGGTTCTCTTCCACTGGCCACAAAAGCTTTTTATCAGATCACTGTAAAGAATCTTCATTCTTGGAACACCATCATCTCCGGTTACTCAAAAAGCTATCTCTACGCTGACGTTTTGCAGCTTTTTCGACGCTTGCGAAGTGAGGGCAATGCAGTTGATACCTTCAACTTGGTGTTTGCCGTTAAAGCGAGTCAAAGGTTGCTGCTTTTGCATAATGGAAGATTGCTTCATTGCTTGTCAATCAAATCTGGGTTGGAAGGAGACTTATTCATCGTGCCTTCACTTTTGGAGATGTATGCTGAGTTGGGTTCTCTGAACGATGCCCACAAGCTGTTTGAGCGATATTCTTACAGAAGCTCCGTTATGTGGGGCTTTATGATAAAAGGGTATTTGAAATTTTCTCAAGAATCCAAAGTTTTTGAGCTATTCTCTTGCATGGCCAATTATTTTGGTTTCCAATGGGATGCTTTCGCAATGGAAGGTTTAGTTCAAGCTTGTGCAAACGTCTTGGCTGGGAGAGAAGGGAAAGCATCTCATGGGGTGTGTATAAAGAACAATCTTCTAGTTAATGTCTGTTTGCTGACATCTATTATGGATATGTATGTGAAATGTGGGGTTATTCATTATGCATTTAGGTTGTTTGAAAAAGCTAATGATCTTAAGGATGTGGTACTATGGAGTGCTGTGATTAATGGGTGTGCCAAGAAAGGGAAATTTTGTGAAGCTTTGTCCGTGTTCAAAAGGATGCTGGAAAACTCAATTACCCCAAATCCAGTGACATTGGCTGGTGTAATTCTAGCCTGCTCTGGTGTGGGGTCTTTGAAACAAGGAAAAAGTGTGCATGGCTTTGCCATTAGAAACATGGTTGAATTGGATGTAGTAAATTATACTTCTCTTGTGGACATGTATTCTAAATGCGGGTGTGTCAAAACTGCTTACAGAATCTTCTGTATGATGCCGGGAAAAAACGTAGTCTCTTGGACTGCAATGATAAATGGATTCGCAATGTATGGCTTGTATTTGGAAGCTCTTTCCATTTTTTATCAAATGACACAGAAAACATGTGTTATATCAGGAAAACACGTGCCCAACTCAGTAACATTTACTTCAGTTCTATCAGCTTGTGGTCACTCTGGAATGGTTCAGGAGGGGTTGAGGATCTTTAACTCTATGAAAGACTATGGCATTTCTCCAACTGAGGAACACTGTGCCTACATGTTAGGTACTTTAGCTAGAGCTGGTCAATTTGATGCAGCATTATCCTTTCTATCAGACATGCCCATAAAACCTGGTCCTAATGTTTTGGGAGCTCTGTTCAGTGCTTGTAGATTCCATAAACAAGTTGAACTCGCTGAAGAAATTGTGAAAACACTTTCACTTTTAGAGCATAATGACATATCCTGGCATGCTTCATTGTCGAACGTAGATGCTGATGGTAGGATGTGGGAAGTAGGAGAGATGGTAATGGCGGAAAAGGGGTTGAATAGGAGGCTTGGCTTTTCCTCAATTGAAGTCAAGAATAAGTTATGTGTATTTAGTTCAAATGATACATTTGTGTTCACAAGCACAGAAATCAGTCATACTTGGAATTCTCTCAGTAGGGAAATGAGAGAAAATGCTTTGTTATGA 1800 0.4094 MRSVLLISSRNPLETLRAFFSRAKILSSAQQLHAQVIINGLHREVFYGSNITHSYIQSGSLPLATKAFYQITVKNLHSWNTIISGYSKSYLYADVLQLFRRLRSEGNAVDTFNLVFAVKASQRLLLLHNGRLLHCLSIKSGLEGDLFIVPSLLEMYAELGSLNDAHKLFERYSYRSSVMWGFMIKGYLKFSQESKVFELFSCMANYFGFQWDAFAMEGLVQACANVLAGREGKASHGVCIKNNLLVNVCLLTSIMDMYVKCGVIHYAFRLFEKANDLKDVVLWSAVINGCAKKGKFCEALSVFKRMLENSITPNPVTLAGVILACSGVGSLKQGKSVHGFAIRNMVELDVVNYTSLVDMYSKCGCVKTAYRIFCMMPGKNVVSWTAMINGFAMYGLYLEALSIFYQMTQKTCVISGKHVPNSVTFTSVLSACGHSGMVQEGLRIFNSMKDYGISPTEEHCAYMLGTLARAGQFDAALSFLSDMPIKPGPNVLGALFSACRFHKQVELAEEIVKTLSLLEHNDISWHASLSNVDADGRMWEVGEMVMAEKGLNRRLGFSSIEVKNKLCVFSSNDTFVFTSTEISHTWNSLSREMRENALL 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0192 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Aed4g0192 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Aed4g0192 599 Gene3D Tetratricopeptide repeat domain 4 130 IPR011990 GO:0005515
Aed4g0192 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 379 IPR002885 -
Aed4g0192 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Aed4g0192 599 PANTHER - 19 558 - -
Aed4g0192 599 Gene3D Tetratricopeptide repeat domain 233 334 IPR011990 GO:0005515
Aed4g0192 599 Gene3D Tetratricopeptide repeat domain 131 232 IPR011990 GO:0005515
Aed4g0192 599 Gene3D Tetratricopeptide repeat domain 335 415 IPR011990 GO:0005515
Aed4g0192 599 TIGRFAM PPR: pentatricopeptide repeat domain 382 413 IPR002885 -
Aed4g0192 599 TIGRFAM PPR: pentatricopeptide repeat domain 281 314 IPR002885 -
Aed4g0192 599 TIGRFAM PPR: pentatricopeptide repeat domain 423 457 IPR002885 -
Aed4g0192 599 TIGRFAM PPR: pentatricopeptide repeat domain 77 110 IPR002885 -
Aed4g0192 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Aed4g0192 599 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 19 558 - -
Aed4g0192 599 Pfam PPR repeat 352 381 IPR002885 -
Aed4g0192 599 Pfam PPR repeat 178 203 IPR002885 -
Aed4g0192 599 Pfam PPR repeat 382 410 IPR002885 -
Aed4g0192 599 Pfam PPR repeat 78 106 IPR002885 -
Aed4g0192 599 Gene3D Tetratricopeptide repeat domain 416 554 IPR011990 GO:0005515
Aed4g0192 599 Pfam PPR repeat family 420 457 IPR002885 -
Aed4g0192 599 Pfam PPR repeat family 278 324 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0192 Aed-Chr4 1418715 1420514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0192 44 594 Glycoside Hydrolase AT3G49170 30.357 9.95e-72 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0192 - - gmx:100775787 1063.52