Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02189 ATGCGTACTGCACCCCTCATTTCATCACAAAACCCTCTCGAAACCCTTCGTGCCTTTTTCTCTTGTGCCAAGGTTCTCCCTTTGGCGCAGCAACTTCACGCTCGGGTCATCATCAACGGGCTTCACAGGGAGGTTTTTTATGGTTCCAACATCACCAATGCCTATGTCCAGTCAGGTTCTCTTTCACTGGCTACAAAAGCTTTTGATCAGATCACCGTAAAGAACCTTCATTCTTGGAACACCATCATCTCCGGTTACTCAAAACGCAGTCTCTATGGTGATGTTTTGCAGCTTTTCAAACGCTTGCGAAGTGAGGGCAGTGCAGTTGATAGCTTCAACTTGGTGTTTGCCATTAAAGCGAGTCAAAGGTTGCTGCTTTTAAATAATGGGAGATTGCTTCATTGCTTGGTCATCAAATCTGGGTTGGAAGGAGACCTTTTCATCGTGCCTGCTCTGTTGGAGATTTACGCTGATTTGGGGTCCCTGAACGATGCCCACAAGCTGTTTGAAAGATATTCTTACAGAAGCTCGGTTATGTGGGGTTTTATGATAAAGGGGTATTTGAAATTTTCTCAATTCGAGCCTGTGCAAACGTGTTGGCTGGGAGAGAAGGGAAAGCATCTCATGGGGTTGTTTGAAGAAGCTATTGACCATAAAGACGTGGTTCTATGGAGTGCTGTTATTAATGGGTGTGCTAAGATAGGGAAATTTCATAAAGCTTTGTCTGTGTTCAAAAGGATGCTGGAAAACTTAATTACCCCAAATCCGGTGACGTTGGCTGGCGTAATTCTAGCTTGCTCTGGTGTGGGGTCTTTGAAACTGGGAATGAGTGTGCACGGCTTTGTGATTAGAAACATGGTTGAATTGGATGTGGTAAATTATACTAGACTTGTGGACATGTATTCCAAATGCGGGTGTGTCAAAGCTGCTAACAGAATCTTCTGTATGATGCCGGCAAAAAGTGTAGTCTCTTGGACTGCAATGATAAATGGATACGCAATGCATGGCTTGTATTTGGAAGCTCTTTATACTTTTGATCAAATGACACAGAATGCATGTGTCATATCAGGAAAACACGTCCCCAACTCAGTTACATTCACTTCAGTTCTATCCGCTTGTAGTCACTCTGGAATGGTTCAGGAGGGGTTAAGGATCTTTAATTCTATGAAAGATTATGGCATTTCTCCAACTGAGGAACACTGTGCCTACATGATAGGTATATTAGCTAGAGCTGGTCTATTTGATGCAGCATTAACCTTTCTATCAAACATGCCCATAAAACCCGGTCCTAGTGTCTGGGGAGCTCTGTTAAGTGCATGTAGATTCCATAAACGAGTTGATCTTGCTGACAAAATAGCAAAAACTCTTTCACTTTTGGAGCCTAATGATTTGTCCTGGCATGCATCATTGTGGAACATATATGGTGATGGTAGGATGTGGGGAATAGGAGAGATGGTAATGGCTGAAGAGGGGTTGAATAAGAGTGTTGACTTTTCCTCAATTGAAGTCAAGAACAAGTTATATGTATTTAGTTCTGATGATACGCTTGCATCCATAAGAACACATATCAGTCATACATGGAATTCTCTCAGTAGAGAAATGAGAGAAAATGCTTGGTTATGA 1623 0.4239 MRTAPLISSQNPLETLRAFFSCAKVLPLAQQLHARVIINGLHREVFYGSNITNAYVQSGSLSLATKAFDQITVKNLHSWNTIISGYSKRSLYGDVLQLFKRLRSEGSAVDSFNLVFAIKASQRLLLLNNGRLLHCLVIKSGLEGDLFIVPALLEIYADLGSLNDAHKLFERYSYRSSVMWGFMIKGYLKFSQFEPVQTCWLGEKGKHLMGLFEEAIDHKDVVLWSAVINGCAKIGKFHKALSVFKRMLENLITPNPVTLAGVILACSGVGSLKLGMSVHGFVIRNMVELDVVNYTRLVDMYSKCGCVKAANRIFCMMPAKSVVSWTAMINGYAMHGLYLEALYTFDQMTQNACVISGKHVPNSVTFTSVLSACSHSGMVQEGLRIFNSMKDYGISPTEEHCAYMIGILARAGLFDAALTFLSNMPIKPGPSVWGALLSACRFHKRVDLADKIAKTLSLLEPNDLSWHASLWNIYGDGRMWGIGEMVMAEEGLNKSVDFSSIEVKNKLYVFSSDDTLASIRTHISHTWNSLSREMRENAWL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02189 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Cca03g02189 540 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 19 190 - -
Cca03g02189 540 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 209 499 - -
Cca03g02189 540 Gene3D Tetratricopeptide repeat domain 7 175 IPR011990 GO:0005515
Cca03g02189 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Cca03g02189 540 TIGRFAM PPR: pentatricopeptide repeat domain 77 110 IPR002885 -
Cca03g02189 540 TIGRFAM PPR: pentatricopeptide repeat domain 222 255 IPR002885 -
Cca03g02189 540 TIGRFAM PPR: pentatricopeptide repeat domain 364 398 IPR002885 -
Cca03g02189 540 TIGRFAM PPR: pentatricopeptide repeat domain 323 354 IPR002885 -
Cca03g02189 540 Pfam PPR repeat family 219 265 IPR002885 -
Cca03g02189 540 Pfam PPR repeat family 361 398 IPR002885 -
Cca03g02189 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Cca03g02189 540 Gene3D Tetratricopeptide repeat domain 224 355 IPR011990 GO:0005515
Cca03g02189 540 Gene3D Tetratricopeptide repeat domain 356 497 IPR011990 GO:0005515
Cca03g02189 540 PANTHER - 19 190 - -
Cca03g02189 540 PANTHER - 209 499 - -
Cca03g02189 540 Pfam PPR repeat 78 106 IPR002885 -
Cca03g02189 540 Pfam PPR repeat 293 320 IPR002885 -
Cca03g02189 540 Pfam PPR repeat 323 351 IPR002885 -
Cca03g02189 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02189 Cca-Chr3 42605164 42606960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02189 15 540 Glycoside Hydrolase AT3G49170 28.439 4.95e-60 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02189 - - gmx:100775787 588.186