Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04353 ATGGCTATGGATTCGTCCAACGACGTCGCTTTGGGTTCCTCGGAGATGGAAAAGTTCCTGTGCGAGTTGTTGCTGGACTCGACTCAGCCTATCTCTGAGCGCTTCAGAGCCCTCTTCTCTCTCCGCAACCTCAAAGGTCCCGCCCCTCGCAACGCCCTTATTCTCGCCACAAGAGATTCATCGAATTTGTTGGCTCATGAAGCTGCATTTGCATTGGGTCAAATGCAAGATTTAGAAGCTATCCCTGCGTTGACCTCAGTTCTGAATGATCTTTCTTTGCATCCTATTGTTCGCCATGAGGCAGCTGAAGCTCTTGGTGCTATTGGTTCAGATAGTAATATTCCTCTGTTGAAAAATAGTTTGGATTCAGATCCTGCTCCGGAGGTTCGAGAAACATGTGAATTAGCTCTTCAACGTATTCAACATTTAAAAGATGCTGGTAATACTGATGAATCTGCAACTGATATATCTCCCTTTAAGTCTGTTGACCCTGCAGCGCCAGCCGCCTCTTGTTCTTCTGTTGATCAATTAAGGGAAGTACTTCTTGATGAAGAAAAAGGAATGTATGAACGCTATGCAGCCCTTTTTGCACTTCGAAATGATGGTGGAGATAAAGCTGTTGCTGCTATTATTGATTCTTTGGGTTCAAAAAGTGCTCTATTGCGACATGAGGTTGCATATGTTTTGGGCCAATTGCAAAACAAATCTGCTTCAACTACTCTATCCAATGTGCTTAAAGATGTGAATGAGCACCCAATGGTTAGACATGAGGCTGCTGAAGCTCTTGGTTCAATTGCAGATGACGAAAGTGTAGCCCTTCTTGAGGAATTTATGGCAGATCCAGAGCCTCTTGTTTCACAAAGTTGTCAAGTTGCTCTAAGCATGCTAGAATTTGAACGATCAGGGAAATCATTTGAGTTCCTGTTCATGCGCACTCCAATTGTGCATTAA 951 0.4385 MAMDSSNDVALGSSEMEKFLCELLLDSTQPISERFRALFSLRNLKGPAPRNALILATRDSSNLLAHEAAFALGQMQDLEAIPALTSVLNDLSLHPIVRHEAAEALGAIGSDSNIPLLKNSLDSDPAPEVRETCELALQRIQHLKDAGNTDESATDISPFKSVDPAAPAASCSSVDQLREVLLDEEKGMYERYAALFALRNDGGDKAVAAIIDSLGSKSALLRHEVAYVLGQLQNKSASTTLSNVLKDVNEHPMVRHEAAEALGSIADDESVALLEEFMADPEPLVSQSCQVALSMLEFERSGKSFEFLFMRTPIVH. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04353 316 SMART E-Z type HEAT repeats 62 91 IPR004155 -
Seca2g04353 316 SMART E-Z type HEAT repeats 188 217 IPR004155 -
Seca2g04353 316 SMART E-Z type HEAT repeats 219 248 IPR004155 -
Seca2g04353 316 SMART E-Z type HEAT repeats 31 60 IPR004155 -
Seca2g04353 316 SMART E-Z type HEAT repeats 252 281 IPR004155 -
Seca2g04353 316 SMART E-Z type HEAT repeats 95 124 IPR004155 -
Seca2g04353 316 FunFam Deoxyhypusine hydroxylase 165 306 - -
Seca2g04353 316 Pfam PBS lyase HEAT-like repeat 254 280 IPR004155 -
Seca2g04353 316 Gene3D - 159 305 IPR011989 -
Seca2g04353 316 Gene3D - 9 157 IPR011989 -
Seca2g04353 316 SUPERFAMILY ARM repeat 95 295 IPR016024 -
Seca2g04353 316 PANTHER PBS LYASE HEAT-LIKE PROTEIN 21 301 - -
Seca2g04353 316 Hamap Deoxyhypusine hydroxylase [DOHH]. 17 306 IPR027517 GO:0008612|GO:0019135
Seca2g04353 316 FunFam Deoxyhypusine hydroxylase 9 157 - -
Seca2g04353 316 Pfam HEAT repeats 53 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04353 Seca-Chr2 128382444 128387165 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04353 K06072 - gmx:100815364 523.472