Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03951 ATGAATTCCGACGTTGATCCCGGCGAAATCCCTCCACCGTCGACGACGGAGTCATCATCATCACCATCATCATCATCACCATCATCATCATCATCACCGTCATCAATCTTAATCCCTGGTCTTCCAAACGATGTATCACGAATAATTCTCTCAATGATTCCTTACGCTCATCACGGTCGTTTGAAATCAATTTCGAAATCATGGAAATCAGCACTTTCATCAAAATCATTTCTCAAAAATCTCAAAAATCATAACCGTAACAATCTTATATGTATCTTCCCTCAAGATCCTTCAATTTCTTCACCTTATCTTTTCGACGTTAACGCCGTTGCTTGGTGTCCACTTCCACCTATGCCATGTAACCCTCACGTTTACGGTTTATGTAACTTCGCTGCCGTTCCGTTAGGTTTTCATATTTACATAATCGGTGGTTCTCATTTCGATACTCGTTCTTTTCCGATTAATCGTCCTTCATCTTCTTCGTCGATGTTTCGTTTCAATTTGAGGGATTTTACTTGGGAGAATCGTGCTTCTATGATTTCGCCACGTGGTAGTTTCGCTTATGCTGTGATTCGTTCCTCTGGTGGTGATAATTCTGGTAATATTGTTGTTGCTGGAGGTGGATCGCGGCATATGTTATTTGGTGCTGCTGGATCTCGGATTCGGTTGGTGGAGCGTTATGATGTTGTGGCGGATCGGTGGGAAGAGTTGGAGCCTCTTCCTGGTTTTCGTGCTGGGTGTGTTGGGTTTTTGGAGAGGGGGGAGAGGGAGTTTAGGGTGGTTGGTGGTCATAGTGGTTCGAGGACTGTTTCGGGGGTTTTTCCGGTGGATGAGTATTGTAGGGATGCAGTTGTGATGGGATTCGAGGATGGTGCGTGGCGTGAAGGTGGGGATATGTGGGGTGATAGGGAGAATGTTAGGGCTGGGAAGATGGTTGTTGGTGATGATTGTGGTTCTCCTTTGGTTTTCATGATTGATGTGAATGAGATTTTCAGATATGACATGTCTTCTACTCGTTGGGTATACGAGTCTTCTGTGCCAGAAAAAGCTCCCCGTGGTTCGGCCTTTGGTACTGTTGTAGTAGCTGGTGAGCTGTATGTATTGACGCATTTATATGGTGATGATTTCACAGAAGCTCGAAGGTCCAGACGCTCTAAGAAGACAGGAAGTATGTGCTTTCAAATCTATAATCCGAAAAAGAAGGCATGGAGAACACGGGTCACAAAGTCACCTTTCGCTTGCCATGTAGATATTAAAAATCCCGCTGTATTGAGCTCAATTTGTCTGTGA 1290 0.445 MNSDVDPGEIPPPSTTESSSSPSSSSPSSSSSPSSILIPGLPNDVSRIILSMIPYAHHGRLKSISKSWKSALSSKSFLKNLKNHNRNNLICIFPQDPSISSPYLFDVNAVAWCPLPPMPCNPHVYGLCNFAAVPLGFHIYIIGGSHFDTRSFPINRPSSSSSMFRFNLRDFTWENRASMISPRGSFAYAVIRSSGGDNSGNIVVAGGGSRHMLFGAAGSRIRLVERYDVVADRWEELEPLPGFRAGCVGFLERGEREFRVVGGHSGSRTVSGVFPVDEYCRDAVVMGFEDGAWREGGDMWGDRENVRAGKMVVGDDCGSPLVFMIDVNEIFRYDMSSTRWVYESSVPEKAPRGSAFGTVVVAGELYVLTHLYGDDFTEARRSRRSKKTGSMCFQIYNPKKKAWRTRVTKSPFACHVDIKNPAVLSSICL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03951 429 MobiDBLite consensus disorder prediction 1 37 - -
Trre13g03951 429 Gene3D - 75 419 IPR015915 GO:0005515
Trre13g03951 429 SUPERFAMILY F-box domain 38 122 IPR036047 GO:0005515
Trre13g03951 429 Pfam Kelch motif 127 179 IPR006652 GO:0005515
Trre13g03951 429 Pfam Kelch motif 200 241 IPR006652 GO:0005515
Trre13g03951 429 SUPERFAMILY Kelch motif 93 406 IPR015915 GO:0005515
Trre13g03951 429 PANTHER F-BOX/KELCH-REPEAT PROTEIN OR23 18 428 - -
Trre13g03951 429 MobiDBLite consensus disorder prediction 12 37 - -
Trre13g03951 429 SMART kelc_smart 201 252 IPR006652 GO:0005515
Trre13g03951 429 SMART kelc_smart 138 193 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03951 Trre-Chr13 47732568 47737093 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03951 - - cam:101509705 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03951 13 47732568 47737093 Trre13g03951 13 47732568 47737093 ECH