Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0012 ATGCATGGCTTGAATTTGGAAGCTATTGCCCTTTTTGATCAAATGACACAGAGCGCTTGTGTTGTATCAGGAAAGCATGTGCCCAACTCAATTACATTCATTTCCGTTCTATCAGCATGTAGTCACTCTGGAATGGTTGAAGAGGGGAGGAGGATATTTAATTCTATGAAAGATTATGCCGTTTCTTCAATTGAGGAACACTATGCCTGCATGATAGGTGTCTTAGCTAAGGCTGGTCAATTTGATGCAGCATTGTCCTTTCTATCAGACATGCCCATAAAACCTGGTCCTAATGATTGGGGAGCTCTGTCAAGTGCATGTAGATTTCATAAACGTGTTGACCTTGCTGAAGAAACAGCAAAAATGCTATCACTTTTAAAACCAAATGATATATCTTTGCATGCATCATCGTCGAACATATATGTTGATGGTAGGATGTGGGAAATAGGGGAGATGATAATTGCTGAAGAGGGATTGAAAAAAAGTCTCGGCTTTTCCTTAATTGAAGTCAATAATAAGTTATGTGTATTTAATTTTGGTGACACACTTGCCTTCAAAAGCACATATATGAGGCACACATGGAATTCTCTCAGTAGAGAAATGAGAGAAAATGTTTTCTTATGA 624 0.383 MHGLNLEAIALFDQMTQSACVVSGKHVPNSITFISVLSACSHSGMVEEGRRIFNSMKDYAVSSIEEHYACMIGVLAKAGQFDAALSFLSDMPIKPGPNDWGALSSACRFHKRVDLAEETAKMLSLLKPNDISLHASSSNIYVDGRMWEIGEMIIAEEGLKKSLGFSLIEVNNKLCVFNFGDTLAFKSTYMRHTWNSLSREMRENVFL* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0012 207 Gene3D Tetratricopeptide repeat domain 2 173 IPR011990 GO:0005515
Apr4g0012 207 PANTHER OS01G0913400 PROTEIN-RELATED 1 206 - -
Apr4g0012 207 Pfam PPR repeat 68 91 IPR002885 -
Apr4g0012 207 Pfam PPR repeat 31 58 IPR002885 -
Apr4g0012 207 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC 1 206 - -
Apr4g0012 207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 29 63 IPR002885 -
Apr4g0012 207 TIGRFAM PPR: pentatricopeptide repeat domain 68 91 IPR002885 -
Apr4g0012 207 TIGRFAM PPR: pentatricopeptide repeat domain 31 58 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0012 Apr-Chr4 123204 123827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0012 2 182 Glycoside Hydrolase AT3G49170 35.676 4.36e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0012 - - aprc:113860725 416.772