Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0170 ATGGATTCGTCAAACGACGTCGCTTTGGTTTCCTCTGAGATGGAGAAGTTCCTGTGCGAGTTGTTGCTGGATTCATCCCAGCCAATTTCTGAGCGCTTCAGGGCATTATTCTCTCTCCGCAACCTCAAAGGCCCCGCCCCTCGCGATGCCCTTATTCTCGCCACAAGGGATACATCGAATTTGTTGGCGCACGAAGCTGCATTTGCGTTGGGTCAAATGCAGGAATTAGAAGCCATTCCTGCTTTGGCTTCAGTTCTGAATGATCTTTCTTTGCATCCCATTGTTCGCCATGAGGCAGCTGAGGCATTGGGTGCTATAGGTTCAGAAGGTAATGTTCCTCTCCTGAAGAATAGTTTGGATTCGGATCCGGCCGAGGAAGTTCGAGAAACATGTGAGTTGGCTCTTCAACGAATTCAGCATTTGAAAGATGCTGGCAATACCGATGAATTGGCTACAACTGAAATATCACCTTTCAAGTCTGTGGATCCAGCCGTGCCAGCGACCTCTTGTACTTCTGTTCAACAACTTAGGGAAATACTTCTTGATGAAGATAAAGGGATGCATGAACGCTATGCAGCTCTTTTTGCACTTCGCAATGATGGTGGAAATGAAGCTGTTGCTGCTATTATTGATTCCTTGAGCTCAAAAAGTGCTCTACTGCGCCATGAGGTTGCATATGTTTTGGGTCAATTGCAAGACAAAGTTGCTTCTGCTGCTCTATCCAATATACTTAAAGATGTGAAGGAGCACCCAATGGTTAGACATGAGGCTGCTGAAGCTCTTGGTTCAATCGCAGATGATCGAAGTGTAGCACTTCTTGAAGAATTTACGGCAGATCCAGAGCCTCTTGTCTCACAAAGTTGCGAAGTTGCTCTAAGCATGCTAGAATTTGAACGATCAGGGAAATCATTCGAGTTCCTGTTCATGCCAACTCCAACTGTGCATTAA 948 0.4589 MDSSNDVALVSSEMEKFLCELLLDSSQPISERFRALFSLRNLKGPAPRDALILATRDTSNLLAHEAAFALGQMQELEAIPALASVLNDLSLHPIVRHEAAEALGAIGSEGNVPLLKNSLDSDPAEEVRETCELALQRIQHLKDAGNTDELATTEISPFKSVDPAVPATSCTSVQQLREILLDEDKGMHERYAALFALRNDGGNEAVAAIIDSLSSKSALLRHEVAYVLGQLQDKVASAALSNILKDVKEHPMVRHEAAEALGSIADDRSVALLEEFTADPEPLVSQSCEVALSMLEFERSGKSFEFLFMPTPTVH* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0170 315 Pfam HEAT repeats 51 135 - -
Vra3g0170 315 PANTHER PBS LYASE HEAT-LIKE PROTEIN 19 301 - -
Vra3g0170 315 PANTHER DEOXYHYPUSINE HYDROXYLASE 19 301 - -
Vra3g0170 315 Coils Coil 124 144 - -
Vra3g0170 315 Pfam PBS lyase HEAT-like repeat 253 276 IPR004155 -
Vra3g0170 315 SUPERFAMILY ARM repeat 61 294 IPR016024 -
Vra3g0170 315 Gene3D - 164 306 IPR011989 -
Vra3g0170 315 SMART E-Z type HEAT repeats 251 280 IPR004155 -
Vra3g0170 315 SMART E-Z type HEAT repeats 60 89 IPR004155 -
Vra3g0170 315 SMART E-Z type HEAT repeats 187 216 IPR004155 -
Vra3g0170 315 SMART E-Z type HEAT repeats 218 247 IPR004155 -
Vra3g0170 315 SMART E-Z type HEAT repeats 29 58 IPR004155 -
Vra3g0170 315 SMART E-Z type HEAT repeats 93 122 IPR004155 -
Vra3g0170 315 Hamap Deoxyhypusine hydroxylase [DOHH]. 15 305 IPR027517 GO:0008612|GO:0019135
Vra3g0170 315 Gene3D - 8 156 IPR011989 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0170 K06072 - gmx:100815364 522.316