Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3677 ATGAGGAAGCCATACATGAGGACAATTGCTCCTCTAAGAGCTTCGCTATCTCCAAGACCGCTCCTTCAGCCTGAAAACCTTACGGATGCTTTTTCCGTCAAGACTGGCTTCAATCCCAGCACGTGTCGTATGAATTTCCAGGTCAAGAACTCTATCCAACGAGGGGATTTAGGACTAGCCCGTAAGTTGTTTGATAAAATGCCTCAACAGAATACCATCTCCAAAAATATGATGATCATGGGGTACATAAGAGCTGGTAATCTTTCTAGTGCCAGGCAGTTGTTTGATTCAATGACCGAACGTACGGCGGTTACCTGGACCATCTTGATCGGAGTATTTGCTCAAAACAATCAAGGTCACGAAGCTTTTAGTCTTTTTGCTGAGATGTGTAGGTGGGGCACACACCCAGATTATATCACCTTTGCCACTCTCCTGTCCGGATTCAGTGAGTCTGACTCTGTATGCCATGTAAACCAAGTTCATGCCCATATTATTAAGCTGGGGTATGATTCAACCTTAATGGTTTCCAACTCCTTGCTCGATTCTTACTGTAAGACCCGTAGTCTTAGTTTAGCTTGTCACCTGTTCAAACATATGCCTGATAAAGATTCTGTCTCTTTCAATGCATTATTGACAGGACTCTCAAAAGATGGAATGCATCAAGAAGCAATAAATCTCTTTTTTGAAATGCAGAAATTGGGTTTTAGGCCTACAGATTTTACTTTTGCCGCTATTTTATGCACAGGTGTGGCATTGGATCACATGGTATTTGGGCAGCAAGTTCATGGCTTTGTAGTGAAGACAAGTTTTGTCTGGAATGTGTTCGTGGCTAATGCATTACTTGATTTCTACTCTAAGCATGACTGTGTTTCTGAAGTGAAGAAACTTTTCGATGAGATGCCAGAACTGGATGGCGTCTCTTACAATGTACTCATTACATGTTATGCTTGGAATGGCCAACTCATAGAATCTTTTGATCTTTTCCGGGCATTACAGTATACTAAATTTGACCGCAGGCAATTCCCATTTTCAACCATATTGAGCATCGCTGCAAATACTCTAAACCTGGAATTGGGCAGGCAAATTCATTCCCAAGTTATTGTGACAGGTGCTGATTCCGAAATTAAGGTTGGAAATGCTTTGGTTGACATGTATGCTAAGTGTGGCAAATTTGACGAAGCAAATGGGATTTTTGCAAATCTTACCCATCAAAGTTCAGTTCCTTGGACAGCCTTGATATCAGCTTATGTTCAGAAGGGACTCCATGAAGAAGGCCTGACTCTATTCTTTGAGATGCAGAAGCGCAAAATAGGTGCTGATTCAGCCACTTATGCTAGCATCTTAAGAGCCTGTGCAAGCTTAGCCTCACTTTCACTGGGAAAGCAGTTACACTCGTACATAATCAGATCCGGATACATTTCAAATGTATTCTCTGGAAGTGCACTGCTTGACATGTATGCAAAATGTGGATCCATGAAAGATGCGCTTCATATGTTTCAAGAGATGCCTGTAAGGAATTCCGTCTCTTGGAATGCACTAATTTCAGCTTATGCACAAAATGGAGACGGTGACCTTACTCTTAGATCATTTGAACAAATGGTCCATTCAGGTTTGCAACCAGATTCAGTCGGCTTCCTTAGTGTTTTGTGTGCCTGCAGCCACTGTGGTCTGGTTGAAGAAGGATTAAAATATTTCGACTCCATGACTCAAACTTATAAACTTGTTCCAAAAAGAGAACATTACGCTTCAATGGTTGATATGCTGTGTAGGAGTGGAAGGTTTAACCAAGCTGAGAGACTGATCGCTCAGATGCCCTTTGAACCTGATGAAATAATGTGGTCATCAATTCTTAACGCATGTAGAATTCATAAGAATCAAGAGCTAGCAAAGAAAGCATCAGACAAGCTATTCAATATGAAAGTGCTTAGAAGCGCTGCTCCATATGTCAGCATGTCCAATATCTATGCAGAAGCTGGTGAATGGGATAGCGTAAGCGTGGTAAAGAAGGCTATGAGAGAGCGAGGAGTTAGAAAAGTCCCAGCTTACAGCTGGGTAGAAGTTAAACATAAAGTTCATGTTTTCTTAGCCAATGACAAGGCTCACCCAGAAATGGAAGAGATTAGGAAGAAGATTGATGAGCTGGCTGAGCAGATGGAGAAAGAAGGGTACAAACCCGACCCAAGTTGTACCCTTCACGATATCGATGAGGAACTCAAGATAGAGTCTCTTAAATATCACAGTGAGCGTCTTGCCATTGCGTTTGCACTTATTAGCACGCCAGAAGGGACACCTATCCTGGTGATGAAGAACCTCCGAGCATGTACTGACTGCCATGCGGCCATCAAGGTAATCTCCAAAATAGCTAAAAGGGAAATCACAGTCAGGGATTCAAGCAGATTCCATCATTTTAGAAATGGATTTTGCTCTTGCGGGGATTACTGGTAG 2445 0.4221 MRKPYMRTIAPLRASLSPRPLLQPENLTDAFSVKTGFNPSTCRMNFQVKNSIQRGDLGLARKLFDKMPQQNTISKNMMIMGYIRAGNLSSARQLFDSMTERTAVTWTILIGVFAQNNQGHEAFSLFAEMCRWGTHPDYITFATLLSGFSESDSVCHVNQVHAHIIKLGYDSTLMVSNSLLDSYCKTRSLSLACHLFKHMPDKDSVSFNALLTGLSKDGMHQEAINLFFEMQKLGFRPTDFTFAAILCTGVALDHMVFGQQVHGFVVKTSFVWNVFVANALLDFYSKHDCVSEVKKLFDEMPELDGVSYNVLITCYAWNGQLIESFDLFRALQYTKFDRRQFPFSTILSIAANTLNLELGRQIHSQVIVTGADSEIKVGNALVDMYAKCGKFDEANGIFANLTHQSSVPWTALISAYVQKGLHEEGLTLFFEMQKRKIGADSATYASILRACASLASLSLGKQLHSYIIRSGYISNVFSGSALLDMYAKCGSMKDALHMFQEMPVRNSVSWNALISAYAQNGDGDLTLRSFEQMVHSGLQPDSVGFLSVLCACSHCGLVEEGLKYFDSMTQTYKLVPKREHYASMVDMLCRSGRFNQAERLIAQMPFEPDEIMWSSILNACRIHKNQELAKKASDKLFNMKVLRSAAPYVSMSNIYAEAGEWDSVSVVKKAMRERGVRKVPAYSWVEVKHKVHVFLANDKAHPEMEEIRKKIDELAEQMEKEGYKPDPSCTLHDIDEELKIESLKYHSERLAIAFALISTPEGTPILVMKNLRACTDCHAAIKVISKIAKREITVRDSSRFHHFRNGFCSCGDYW 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3677 814 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 151 751 IPR046960 GO:0003723|GO:0009451
Prci1g3677 814 Coils Coil 704 724 - -
Prci1g3677 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Prci1g3677 814 FunFam Pentatricopeptide repeat-containing protein At3g13880 360 458 - -
Prci1g3677 814 Gene3D Tetratricopeptide repeat domain 574 747 IPR011990 GO:0005515
Prci1g3677 814 Gene3D Tetratricopeptide repeat domain 457 573 IPR011990 GO:0005515
Prci1g3677 814 Gene3D Tetratricopeptide repeat domain 23 166 IPR011990 GO:0005515
Prci1g3677 814 Gene3D Tetratricopeptide repeat domain 349 456 IPR011990 GO:0005515
Prci1g3677 814 Pfam PPR repeat family 202 246 IPR002885 -
Prci1g3677 814 Pfam PPR repeat family 406 452 IPR002885 -
Prci1g3677 814 Pfam PPR repeat family 506 552 IPR002885 -
Prci1g3677 814 Pfam PPR repeat family 103 148 IPR002885 -
Prci1g3677 814 NCBIfam pentatricopeptide repeat 177 203 IPR002885 -
Prci1g3677 814 NCBIfam pentatricopeptide repeat 508 542 IPR002885 -
Prci1g3677 814 NCBIfam pentatricopeptide repeat 205 238 IPR002885 -
Prci1g3677 814 NCBIfam pentatricopeptide repeat 409 440 IPR002885 -
Prci1g3677 814 NCBIfam pentatricopeptide repeat 104 137 IPR002885 -
Prci1g3677 814 NCBIfam pentatricopeptide repeat 481 505 IPR002885 -
Prci1g3677 814 NCBIfam pentatricopeptide repeat 76 101 IPR002885 -
Prci1g3677 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 102 136 IPR002885 -
Prci1g3677 814 FunFam Putative pentatricopeptide repeat-containing protein 572 749 - -
Prci1g3677 814 Gene3D Tetratricopeptide repeat domain 200 251 IPR011990 GO:0005515
Prci1g3677 814 Pfam DYW family of nucleic acid deaminases 722 814 IPR032867 GO:0008270
Prci1g3677 814 Pfam PPR repeat 480 505 IPR002885 -
Prci1g3677 814 Pfam PPR repeat 278 302 IPR002885 -
Prci1g3677 814 Pfam PPR repeat 379 398 IPR002885 -
Prci1g3677 814 Pfam PPR repeat 306 329 IPR002885 -
Prci1g3677 814 Pfam PPR repeat 76 101 IPR002885 -
Prci1g3677 814 Pfam PPR repeat 581 604 IPR002885 -
Prci1g3677 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 101 IPR002885 -
Prci1g3677 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Prci1g3677 814 Gene3D Tetratricopeptide repeat domain 252 348 IPR011990 GO:0005515
Prci1g3677 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 505 IPR002885 -
Prci1g3677 814 FunFam Pentatricopeptide repeat-containing protein mitochondrial 459 569 - -
Prci1g3677 814 FunFam Putative pentatricopeptide repeat-containing protein At2g01510 28 160 - -
Prci1g3677 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Prci1g3677 814 Pfam E motif 623 686 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3677 Prci-Chr1 53294908 53303448 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3677 55 814 Glycoside Hydrolase AT3G49170 33.419 6.54e-155 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3677 - - gmx:100793014 1234.55