Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1165 ATGAATCACATGAAATCATGTACAAGGAAAAACGCACTACACAACCTTGCCATTTTCAGTTCACAACCACACCTTCAACTCCAAATCCCTATCGATGCTTCAATAATCAAAACTGGCTTCAATCCCAACACATGTCGTTCAAATTTCTGGCTCAATACCCATCTTCAACATGGGGAATTGATTCATGCCCGCAACCTGTTTGACAAAATGACTCACAAGAATACTATTTCCTCAAACATAATGATCATGGGTTACATAAAATCTGGTAATCTTTCTACTGCTAGGGACTTATTTGACAGCATGATTGAACGCACGGCCGTTACCTGGACAATGCTGATCGGGGGCTATGCCAAGAACAATCAGTTTCGTGAGGCTCTTGGTCTTTTTGCAGATATGTTTAGGCACGGAATTGCCCCGGATTATATTACCTTGGCTACTCTCTTATCTGGGTTCAGTGAGTTTGACTCTGTCAATGAAGTAACACAAGTTCATGCCCATGTTGTTAAATTGGGATATGATTCGACAGTTATGGTTTGCAACTCATTGCTTGATTCTTACTGCAAAATCCGTTGCCTTGGTTTAGCTTGTCACCTGTTCAAGCATATGCCTGAGAAGGATCCTGTTACTTTTAATGCATTGTTGACAGGATACTCAAAAGAGGGGTTGAATCGTGAAGCGATAAACCTGTTTTTCAAAATGCAGGATTTGGGGTTTAGGCCTACAGACTTTACTTTCGCTGCAGTTTTATGTGCAGGTATACAGTTGGATGATATAGAATTTGGGCAGCAAGTTCATGGTTTCGTAGTGAAGACCAACTTCGTGTGGAATGTGTTTGTGGCTAATGCTTTGCTTGACTTCTACTCGAAGCATGACCATGTTGCTGAAGTAAGGAAACTTTTTTATGAGATGCCGGAGTTGGATGGTATCTCTTACAATGTACTCATCACATGTTACGCGTGGAATGAAAAACTCAGAGAATCTATTGATCTTTTCAGGGAATTGCAGTTTACTGGATTTGACCGCAGGCAATTCCCATTTTCTACCTTACTGAGCATAGCTTCAAATGCTTTAAACCTGGAAATGGGTAGGCAAATTCATTCCCAGGCTGTTGTAACGACTGCCATTTCAGAAATTCTGGTTGGGAATTCTTTGGTTGACATGTATGCTAAATGTGACAGATTTGGTGAAGCGAATAGGATTTTTGCAAATCTGACTCATCAAAGTTCAGTTCCATGGACTGCCTTGATCTCGGCTTATGTTCAGAAGGGACTCCATGAAGAAGGCGTAAAGCTATTCATTGAGATGCAGAGAGCTAAAATTTGCGCTGACTCGTCCACTTATGCCAGCATTCTAAGAGCAAGTGCAAGTTTAGCCTCAATCACACTGGGAAAACTGATACATTCACATATAATCAGATCAGGATACATTTCAAATGTATTTTCTGGGAGTGCACTACTCGACATGTATGCGAAATGTGGATCCATAAAAAATGCACTTCAAATGTTTCAAGAGATGCCTGTGAGAAACTTAGTCTCTTGGAATGCACTGATTTCAGCTTATGCACAAAATGGAGACGGCGACCTTTCACTTAGATCATTTGAACAAATGGTTCATTCAGGTTTGGAACCAAATTCTGTTAGTTTCCTGAGCATTCTCTGTGCCTGCAGCCATTGTGGTCTAGTTGAAGAAGGATTGCAGTACTTTAATTCCATGAATGAAACATACAAACTTGTTCCCAAAAGAGAGCATTATGCATCAATTGTTGATATGTTATGTCGGAATGGAAGATTTGAGGAGGCTGAGAAATTGATGGTTCATATGCCTTTTGACCCCGATGAAATTATGTGGTCATCGATTCTCAACTCATGTAGAATCCATAAAAATCAAGAGTTGGCGAAGAAAGCAGCAGAACAACTATTCAATATGAAGGCCCTCAGAGATGCTGCTCCATATGTTAGCATGTCCAATATCTATGCAGCAGCAGGTGAGTGGGACAATGTAGGGAAGGTGAAGAAGGCCATGAGAGACCGAGGAGTTAAAAAGGTCCCGGCTTATAGTTGGGTTGAAATCAAACACAAAACTCATGTTTTCTCGGCGAACGACAAGTCTCACCCACAAATGACAGAGATAATGAGGAAGCTTGATGAGCTCGAAGAGAAAATGGAGAAAGAAGGGTATAAACCCGATTCAAGTTGCGCCCTTCACAACGTCGATGAGGAAGTCAAAGTAGAGTCTCTTAAATATCATAGTGAACGCATTGCCATTGCTTTTGCACTAATTAGCACCCCAAAGGGGTCACCTATATTGGTGATGAAGAACTTAAGAGCGTGTACCGATTGTCATGCCGCGATCAAGGTAATCTCGAAGATAGTTGATAGGAATATCACAGTCAGAGATTCAAATAGGTTCCATCACTTCAGAGATGGATTTTGCTCCTGTAGGGACTATTGGTAG 2454 0.4116 MNHMKSCTRKNALHNLAIFSSQPHLQLQIPIDASIIKTGFNPNTCRSNFWLNTHLQHGELIHARNLFDKMTHKNTISSNIMIMGYIKSGNLSTARDLFDSMIERTAVTWTMLIGGYAKNNQFREALGLFADMFRHGIAPDYITLATLLSGFSEFDSVNEVTQVHAHVVKLGYDSTVMVCNSLLDSYCKIRCLGLACHLFKHMPEKDPVTFNALLTGYSKEGLNREAINLFFKMQDLGFRPTDFTFAAVLCAGIQLDDIEFGQQVHGFVVKTNFVWNVFVANALLDFYSKHDHVAEVRKLFYEMPELDGISYNVLITCYAWNEKLRESIDLFRELQFTGFDRRQFPFSTLLSIASNALNLEMGRQIHSQAVVTTAISEILVGNSLVDMYAKCDRFGEANRIFANLTHQSSVPWTALISAYVQKGLHEEGVKLFIEMQRAKICADSSTYASILRASASLASITLGKLIHSHIIRSGYISNVFSGSALLDMYAKCGSIKNALQMFQEMPVRNLVSWNALISAYAQNGDGDLSLRSFEQMVHSGLEPNSVSFLSILCACSHCGLVEEGLQYFNSMNETYKLVPKREHYASIVDMLCRNGRFEEAEKLMVHMPFDPDEIMWSSILNSCRIHKNQELAKKAAEQLFNMKALRDAAPYVSMSNIYAAAGEWDNVGKVKKAMRDRGVKKVPAYSWVEIKHKTHVFSANDKSHPQMTEIMRKLDELEEKMEKEGYKPDSSCALHNVDEEVKVESLKYHSERIAIAFALISTPKGSPILVMKNLRACTDCHAAIKVISKIVDRNITVRDSNRFHHFRDGFCSCRDYW 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1165 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Lal25g1165 817 Pfam E motif 626 689 IPR046848 -
Lal25g1165 817 PANTHER - 343 435 - -
Lal25g1165 817 PANTHER - 28 340 - -
Lal25g1165 817 PANTHER - 435 760 - -
Lal25g1165 817 Gene3D Tetratricopeptide repeat domain 546 754 IPR011990 GO:0005515
Lal25g1165 817 Gene3D Tetratricopeptide repeat domain 257 374 IPR011990 GO:0005515
Lal25g1165 817 Gene3D Tetratricopeptide repeat domain 375 459 IPR011990 GO:0005515
Lal25g1165 817 PANTHER OS01G0913400 PROTEIN-RELATED 28 340 - -
Lal25g1165 817 PANTHER OS01G0913400 PROTEIN-RELATED 435 760 - -
Lal25g1165 817 PANTHER OS01G0913400 PROTEIN-RELATED 343 435 - -
Lal25g1165 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Lal25g1165 817 Pfam E+ motif 694 721 IPR046849 -
Lal25g1165 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 104 IPR002885 -
Lal25g1165 817 TIGRFAM PPR: pentatricopeptide repeat domain 107 140 IPR002885 -
Lal25g1165 817 TIGRFAM PPR: pentatricopeptide repeat domain 412 443 IPR002885 -
Lal25g1165 817 TIGRFAM PPR: pentatricopeptide repeat domain 178 205 IPR002885 -
Lal25g1165 817 TIGRFAM PPR: pentatricopeptide repeat domain 208 241 IPR002885 -
Lal25g1165 817 TIGRFAM PPR: pentatricopeptide repeat domain 511 544 IPR002885 -
Lal25g1165 817 TIGRFAM PPR: pentatricopeptide repeat domain 79 104 IPR002885 -
Lal25g1165 817 TIGRFAM PPR: pentatricopeptide repeat domain 584 607 IPR002885 -
Lal25g1165 817 Pfam PPR repeat family 409 453 IPR002885 -
Lal25g1165 817 Pfam PPR repeat family 106 151 IPR002885 -
Lal25g1165 817 Pfam PPR repeat family 206 249 IPR002885 -
Lal25g1165 817 Pfam PPR repeat family 509 555 IPR002885 -
Lal25g1165 817 Gene3D Tetratricopeptide repeat domain 160 256 IPR011990 GO:0005515
Lal25g1165 817 Coils Coil 707 727 - -
Lal25g1165 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Lal25g1165 817 Pfam DYW family of nucleic acid deaminases 725 817 IPR032867 GO:0008270
Lal25g1165 817 Gene3D Tetratricopeptide repeat domain 460 544 IPR011990 GO:0005515
Lal25g1165 817 Gene3D Tetratricopeptide repeat domain 31 159 IPR011990 GO:0005515
Lal25g1165 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Lal25g1165 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Lal25g1165 817 Pfam PPR repeat 77 104 IPR002885 -
Lal25g1165 817 Pfam PPR repeat 309 335 IPR002885 -
Lal25g1165 817 Pfam PPR repeat 179 205 IPR002885 -
Lal25g1165 817 Pfam PPR repeat 584 607 IPR002885 -
Lal25g1165 817 Pfam PPR repeat 281 305 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g1165 Lal-Chr25 15088321 15090774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g1165 58 817 Glycoside Hydrolase AT3G49170 35.954 1.29e-160 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1165 - - gmx:100793014 1347.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g1165 25 15088321 15090774 Lal25g1165 25 15088321 15090774 ECH