Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02052 ATGATGATTCTCATTCATTCAATTCAATTCACTTTTGAAAGCAGGTTAGAAGGAAAAGTGGCAATCATAACAGGGGCAGCAAGTGGACTTGGAAAGGCCACAGCCCATGAGTTTATCCAACATGGTGCCCAAGTCATCATTGCTGACAACGACACACAACTTGGGCCTCAAGTTGCAAATGAATTGGGCCCATCAGCCCAATATGTAGAATGTGATGTCACTATTGAGGCCCAAATTGAAGAAGCTGTGAATGTTGCCATGACAAAGTATGGTAAACTAGACATCATGTACAACAATGCTGGCATAACAGGCCCAATAACCCCACATAGCATAACAGAATTGGACCTAGATGAATTTGACAAGGTCATGAGAATCAATGTTACTGGAATCATTGGAGGTATAAAACACGCGGCCCGAGTGATGGTACCGGTGGGTTATGGGTCTATTATATGCACATCAAGCATAAGTGGGCTATTGGGTGGGCTTGGGCCTCATCCATACACAATTTCAAAATCTACAATACCCGGTGTGGTGAAATCTGTGGCTAGTGAACTATGTGGAGCTGGGATTAGAGTGAATTGCATATCACCAGCTGCAATTCCTACACCAATGTCATTGGGTCAAGTTGGAAAATTTCTTCCTGGTTTCACCCCAGAACAGATTGGAGAAATAGTTAGTGGGCTTGGTGTTCTCAAAGGTGCAAAATGTGAGGGTATTGATATTGCTAGAGCTGCATTGTATTTGGCATCAGATGAGTCAAAGTTTATTTCTGGTCACAATCTCATAGTTGATGGAGGGTTCACTTGCTTTAAAAATTTCGTGTTTCCGTCTCCGGATCAATCAGCCTAA 849 0.4276 MMILIHSIQFTFESRLEGKVAIITGAASGLGKATAHEFIQHGAQVIIADNDTQLGPQVANELGPSAQYVECDVTIEAQIEEAVNVAMTKYGKLDIMYNNAGITGPITPHSITELDLDEFDKVMRINVTGIIGGIKHAARVMVPVGYGSIICTSSISGLLGGLGPHPYTISKSTIPGVVKSVASELCGAGIRVNCISPAAIPTPMSLGQVGKFLPGFTPEQIGEIVSGLGVLKGAKCEGIDIARAALYLASDESKFISGHNLIVDGGFTCFKNFVFPSPDQSA 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02052 282 Pfam Enoyl-(Acyl carrier protein) reductase 25 268 - -
Trre13g02052 282 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 13 271 - -
Trre13g02052 282 Gene3D - 7 275 - -
Trre13g02052 282 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Trre13g02052 282 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Trre13g02052 282 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 IPR002347 -
Trre13g02052 282 FunFam Short-chain dehydrogenase reductase 6 272 - -
Trre13g02052 282 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 269 IPR036291 -
Trre13g02052 282 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Trre13g02052 282 PRINTS Glucose/ribitol dehydrogenase family signature 231 251 IPR002347 -
Trre13g02052 282 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Trre13g02052 282 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Trre13g02052 282 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Trre13g02052 282 PRINTS Glucose/ribitol dehydrogenase family signature 167 186 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02052 Trre-Chr13 17769335 17770586 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02052 16 268 Acyl Lipid Metabolism Gene Families AT1G63380 31.559 7.39e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02052 - - cam:101504238 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02052 13 17769335 17770586 Trre13g02052 13 17769335 17770586 ECH