Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03358 ATGCTCAGAGCACTAGCCAGGGAGTTCAAGCTCAAGACCCTTGCAAATGGTTTGATTCAAAAGAACAGCAGATTCTATGCAACGGTTGGTGGGAGAAAGTTAGAAGGAAAAGTGGCACTCATAACAGGGTCAGCAAGTGGACTTGGAAAGGCCACAGCCCATGAATTTGTCCAACATGGGGCCCAAGTCATCATTGCTGATAATGACACTGTACTTGGGCCACAAGTTGCAAAAGAATTGGGCCCTTCAGCCCATTATGTGGAATGTGATGTAACCATTGAGGCCCAAGTGGCAGAAGCTGTTGATTTTGCCATGACCAATTATGGCAAGCTGGACATCATGTACAACAATGCTGGCATAACAGGCCCAACAATCCCACCAAGCATAGCAGAGCTTGATCTTGATGAATTTGATAAAGTGATGAGGATCAATGTCAGGGGAATGATTGCAGGTATAAAGCATGCGGCCCGAGTCATGATACCTGTGGGCTCTGGGTCCATACTATGCACTTCAAGCATAAGTGGGATCATGGGTGGGCTTGGGCCTCATCCATACACAATATCAAAGTTTACAATACCTGGGGTAGTGAAATCTGTGGCTAGTGAGCTATGTAGAGCTGGAATCAGAGTCAATTGTATATCCCCAGCACCAATTCCTACACCCATGTCCCTGGGTCAAATAGGGAAGTTTTATCCTGGTTTAACCCAAGAACAGATAGTGGCCATTGTGAATGGGCTTAGTGGGCTTAAAGGTGCCAAGTGTGAGGACATTGATGTGGCCCGGGCTGCATTGTACTTGGCTTCAGATGAAGCAAAGTTTATCTCAGGACATAATCTGATTGTGGATGGAGGGTTCACCTGCTTTAAAAATCTTGAGTTCCCTTCTCCACATTAA 894 0.4597 MLRALAREFKLKTLANGLIQKNSRFYATVGGRKLEGKVALITGSASGLGKATAHEFVQHGAQVIIADNDTVLGPQVAKELGPSAHYVECDVTIEAQVAEAVDFAMTNYGKLDIMYNNAGITGPTIPPSIAELDLDEFDKVMRINVRGMIAGIKHAARVMIPVGSGSILCTSSISGIMGGLGPHPYTISKFTIPGVVKSVASELCRAGIRVNCISPAPIPTPMSLGQIGKFYPGLTQEQIVAIVNGLSGLKGAKCEDIDVARAALYLASDEAKFISGHNLIVDGGFTCFKNLEFPSPH. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03358 297 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 32 289 - -
Seca2g03358 297 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 287 IPR036291 -
Seca2g03358 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 173 IPR002347 -
Seca2g03358 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 185 204 IPR002347 -
Seca2g03358 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 109 120 IPR002347 -
Seca2g03358 297 PRINTS Glucose/ribitol dehydrogenase family signature 109 120 IPR002347 -
Seca2g03358 297 PRINTS Glucose/ribitol dehydrogenase family signature 185 204 IPR002347 -
Seca2g03358 297 PRINTS Glucose/ribitol dehydrogenase family signature 159 175 IPR002347 -
Seca2g03358 297 PRINTS Glucose/ribitol dehydrogenase family signature 249 269 IPR002347 -
Seca2g03358 297 PRINTS Glucose/ribitol dehydrogenase family signature 38 55 IPR002347 -
Seca2g03358 297 PRINTS Glucose/ribitol dehydrogenase family signature 206 223 IPR002347 -
Seca2g03358 297 Pfam Enoyl-(Acyl carrier protein) reductase 43 286 - -
Seca2g03358 297 FunFam Short-chain dehydrogenase reductase 24 290 - -
Seca2g03358 297 Gene3D - 27 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03358 Seca-Chr2 102893197 102896557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03358 33 286 Acyl Lipid Metabolism Gene Families AT1G63380 30.682 9.18e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03358 - - gmx:100808525 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03358 2 102893197 102896557 Seca2g03358 2 102893197 102896557 ECH