Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01864 ATGTTCAGAACACTAGCAAGGGAGTTGAAGCTCACCAACATGAGCAATGGTAGTATGGTTAAAAAATGCTGCAGATTCTATGCAAGTTCAGTAGTTGGTGGAACAAGCAAGTTGGATGGAAAAGTGGCAATCATAACAGGATCAGCAAGTGGGCTTGGAAAGGCCACAGCCCATGAATTTATCCAAAATGGGGCCCAAGTTATTATTGCTGACAACAACACTCAACTTGGGCCACAAGTTGCAAAAGAGTTAGGCCCATCAGCACAATATGTGGAGTGTGATGTCACTGTTGAAGCCCAGATAGAAGAAGTTGTAAATGTTGCCATAACAAAGTATGGTAAACTAGACATCATGTACAACAATGCTGGCATAACAGGCCCAATATTCCCACCAAGCATAACAGAATTGAACCTTGATGAATATGAAAAAGTCATGAGAATCAATGTCACTGGAGTCATCGCAGGAATAAAACACGCAGCCCGCGTGATGGTACCAAAGGGCTATGGATCAATTATTTGCACATCAAGCATAAGTGGGCTTCTTGGTGGGCTTGGACCTCATTCATACAATATATCAAAATTTACAATACCTGGAATTGTGAAATCTGTAGCTAGTGAGCTATGTAAAGATGGGGTTAGAGTCAATTGCATATCACCATCTGCAATTCCTACACCAATGACATTGACTCAAGTTGGACAATTTCTTCGTGCTTTCACCCAAGAAGAAATAGGAGAAATGGTAAGTGAGCTTAGTGTTCTCAAAGGTGCCAAATGTGAGGCCATTGATGTTGCTAGGGCTGCATTATACTTGGCATCAGATGATTCTAAGTTTATCTCGGGTCACAATCTCGTAGTTGATGGAGCATTCACTAGCTTTAAAAATTTCGTGTTTGCTTCTCCCGATTAA 906 0.4128 MFRTLARELKLTNMSNGSMVKKCCRFYASSVVGGTSKLDGKVAIITGSASGLGKATAHEFIQNGAQVIIADNNTQLGPQVAKELGPSAQYVECDVTVEAQIEEVVNVAITKYGKLDIMYNNAGITGPIFPPSITELNLDEYEKVMRINVTGVIAGIKHAARVMVPKGYGSIICTSSISGLLGGLGPHSYNISKFTIPGIVKSVASELCKDGVRVNCISPSAIPTPMTLTQVGQFLRAFTQEEIGEMVSELSVLKGAKCEAIDVARAALYLASDDSKFISGHNLVVDGAFTSFKNFVFASPD 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01864 301 FunFam Short-chain dehydrogenase reductase 29 294 - -
Vifa5g01864 301 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 189 208 IPR002347 -
Vifa5g01864 301 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Vifa5g01864 301 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
Vifa5g01864 301 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 35 293 - -
Vifa5g01864 301 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 290 IPR036291 -
Vifa5g01864 301 Gene3D - 30 298 - -
Vifa5g01864 301 PRINTS Glucose/ribitol dehydrogenase family signature 253 273 IPR002347 -
Vifa5g01864 301 PRINTS Glucose/ribitol dehydrogenase family signature 210 227 IPR002347 -
Vifa5g01864 301 PRINTS Glucose/ribitol dehydrogenase family signature 42 59 IPR002347 -
Vifa5g01864 301 PRINTS Glucose/ribitol dehydrogenase family signature 189 208 IPR002347 -
Vifa5g01864 301 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Vifa5g01864 301 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Vifa5g01864 301 Pfam Enoyl-(Acyl carrier protein) reductase 47 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01864 Vifa-Chr5 544635441 544639555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01864 37 290 Acyl Lipid Metabolism Gene Families AT1G63380 30.189 5.03e-24 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01864 - - cam:101504238 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01864 5 544635441 544639555 Vifa5g01864 5 544635441 544639555 ECH